Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	936,549	T→C	V1109A (GTG→GCG)	ftsK →	cell division DNA translocase FtsK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	936,549	0	T	C	100.0%	330.3 / NA	87	V1109A (GTG→GCG)	ftsK	cell division DNA translocase FtsK
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (52/35); total (52/35)

TATAAACTGATGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGTGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTCGTAC  >  NC_000913/936413‑936683

tataAACTGATGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCt                                                                                                                                     <  1:431572/140‑1 (MQ=255)

  taAACTGATGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGa                                                                                                                                   >  2:729980/1‑140 (MQ=255)

      cTGATGGCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCGGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGaaaaa                                                                                                                               <  2:576922/140‑1 (MQ=255)

       tGATGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGaaaaaa                                                                                                                              <  1:345914/140‑1 (MQ=255)

        gATGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAg                                                                                                                             <  1:403289/140‑1 (MQ=255)

        gATGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAg                                                                                                                             <  2:214250/140‑1 (MQ=255)

         aTGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGa                                                                                                                            <  1:723175/140‑1 (MQ=255)

         aTGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGa                                                                                                                            <  1:564894/140‑1 (MQ=255)

          tGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGaa                                                                                                                           >  1:1203558/1‑140 (MQ=255)

          tGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGaa                                                                                                                           >  2:1238072/1‑140 (MQ=255)

          tGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGaa                                                                                                                           >  2:915262/1‑140 (MQ=255)

            tCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAAcc                                                                                                                         <  1:253735/140‑1 (MQ=255)

            tCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAAcc                                                                                                                         <  2:695648/140‑1 (MQ=255)

               gcgcTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATa                                                                                                                      <  2:402728/140‑1 (MQ=255)

               gcgcTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATa                                                                                                                      <  2:412591/140‑1 (MQ=255)

                cgcTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATAc                                                                                                                     >  2:1098416/1‑140 (MQ=255)

                 gcTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACa                                                                                                                    <  2:1036062/140‑1 (MQ=255)

                 gcTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACa                                                                                                                    >  1:385937/1‑140 (MQ=255)

                   tGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACAtt                                                                                                                  <  1:668102/140‑1 (MQ=255)

                        gtgCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTgtggt                                                                                                             <  1:974147/140‑1 (MQ=255)

                               aTCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTgttggtt                                                                                                      >  2:1177265/1‑140 (MQ=255)

                                     cGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGaa                                                                                                >  1:112030/1‑140 (MQ=255)

                                        gTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAAttt                                                                                             >  1:151368/1‑140 (MQ=255)

                                         ttATAACGAAAAAATTGCTGAAGCCGAGCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTg                                                                                            <  2:99400/140‑1 (MQ=255)

                                          tataACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGc                                                                                           >  2:447244/1‑140 (MQ=255)

                                              aCGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGAc                                                                                       >  1:8629/1‑140 (MQ=255)

                                              aCGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTCACGAATTTGCCGAc                                                                                       <  1:548281/140‑1 (MQ=255)

                                                 aaaaaaTTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCtg                                                                                    >  1:139558/1‑140 (MQ=255)

                                                 aaaaaaTTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCtg                                                                                    >  1:1374871/1‑140 (MQ=255)

                                                   aaaaTTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCtgat                                                                                  <  2:530278/140‑1 (MQ=255)

                                                            gAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACggt                                                                         <  2:174371/140‑1 (MQ=255)

                                                            gAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACggt                                                                         <  2:972407/140‑1 (MQ=255)

                                                             aaGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACggta                                                                        >  1:828690/1‑140 (MQ=255)

                                                                         tgatgCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTg                                                            >  1:441710/1‑140 (MQ=255)

                                                                          gatgCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTgg                                                           <  1:329202/140‑1 (MQ=255)

                                                                          gatgCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTgg                                                           >  1:1409816/1‑140 (MQ=255)

                                                                            tgCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGaa                                                         <  1:1206973/140‑1 (MQ=255)

                                                                             gCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAag                                                        <  2:151368/140‑1 (MQ=255)

                                                                             gCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAag                                                        <  2:817627/140‑1 (MQ=255)

                                                                              cGTCCGATTCCAGACCCGTACTGGAAGCCGGGCGACGGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGCAAAAAAGGGGAaga                                                       >  2:1389437/1‑140 (MQ=255)

                                                                                tCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGc                                                     >  1:632263/1‑140 (MQ=255)

                                                                                tCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGc                                                     >  2:1475717/1‑140 (MQ=255)

                                                                                 ccGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCt                                                    >  1:201983/1‑140 (MQ=255)

                                                                                     ttCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATa                                                >  1:1420175/1‑140 (MQ=255)

                                                                                      tCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAg                                               >  1:735512/1‑140 (MQ=255)

                                                                                          gACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACg                                           >  2:594662/1‑140 (MQ=255)

                                                                                           aCCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGt                                          >  2:1501639/1‑140 (MQ=255)

                                                                                             ccGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCt                                        >  2:1335486/1‑140 (MQ=255)

                                                                                               gTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTgg                                      >  2:551053/1‑140 (MQ=255)

                                                                                               gTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTgg                                      <  2:828690/140‑1 (MQ=255)

                                                                                               gTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTgg                                      >  1:390581/1‑140 (MQ=255)

                                                                                                tACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGgc                                     >  1:161036/1‑140 (MQ=255)

                                                                                                tACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGgc                                     >  2:169713/1‑140 (MQ=255)

                                                                                                      aaGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCaaaa                               <  1:729980/140‑1 (MQ=255)

                                                                                                       aGCCGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCaaaaa                              >  1:561143/1‑140 (MQ=255)

                                                                                                          cGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGcc                           >  1:618378/1‑140 (MQ=255)

                                                                                                          cGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGcc                           >  2:827287/1‑140 (MQ=255)

                                                                                                          cGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGcc                           >  1:580043/1‑140 (MQ=255)

                                                                                                          cGGGTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGcc                           >  1:59703/1‑140 (MQ=255)

                                                                                                            ggTGACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCg                         >  1:13318/1‑140 (MQ=255)

                                                                                                               gACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGc                      >  2:693050/1‑140 (MQ=255)

                                                                                                               gACAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGc                      >  2:1190412/1‑140 (MQ=255)

                                                                                                                 cAGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCcg                    <  2:441710/140‑1 (MQ=255)

                                                                                                                  aGTATGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCcgc                   <  2:32387/140‑1 (MQ=255)

                                                                                                                      tGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGt               >  1:1127537/1‑140 (MQ=255)

                                                                                                                      tGGATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGt               >  1:214676/1‑140 (MQ=255)

                                                                                                                       ggATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGGCGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTa              >  1:1368324/1‑140 (MQ=255)

                                                                                                                       ggATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTa              >  2:28000/1‑140 (MQ=255)

                                                                                                                        gATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTAt             <  1:1463/140‑1 (MQ=255)

                                                                                                                        gATGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTAt             <  2:385937/140‑1 (MQ=255)

                                                                                                                         aTGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATc            >  2:999034/1‑140 (MQ=255)

                                                                                                                         aTGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATc            <  1:1238072/140‑1 (MQ=255)

                                                                                                                          tGCCCAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATcc           >  1:1274926/1‑140 (MQ=255)

                                                                                                                            cccAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCAc         <  1:537765/140‑1 (MQ=255)

                                                                                                                            cccAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCAc         <  1:525191/140‑1 (MQ=255)

                                                                                                                            cccAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCAc         >  2:361198/1‑140 (MQ=255)

                                                                                                                            cccAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGCATCCAc         >  1:635667/1‑140 (MQ=255)

                                                                                                                             ccAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCAcc        <  2:140081/140‑1 (MQ=255)

                                                                                                                             ccAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCAcc        <  2:92669/140‑1 (MQ=255)

                                                                                                                              cAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGTTGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCt       >  1:536331/1‑140 (MQ=255)

                                                                                                                              cAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCt       >  2:94199/1‑140 (MQ=255)

                                                                                                                              cAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCt       >  1:781742/1‑140 (MQ=255)

                                                                                                                              cAGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGCAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCt       >  2:776966/1‑140 (MQ=255)

                                                                                                                               aGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTc      >  2:932449/1‑140 (MQ=255)

                                                                                                                               aGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTc      >  2:122398/1‑140 (MQ=255)

                                                                                                                               aGCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTc      >  2:374104/1‑140 (MQ=255)

                                                                                                                                gCATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTCg     >  2:841610/1‑140 (MQ=255)

                                                                                                                                 cATCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTCGt    <  2:161036/140‑1 (MQ=255)

                                                                                                                                   tCCGGCGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTCGTAc  >  2:1091507/1‑140 (MQ=255)

TATAAACTGATGTCTGCGCTGGGTGTGCGTAATCTGGCGGGTTATAACGAAAAAATTGCTGAAGCCGATCGCATGATGCGTCCGATTCCAGACCCGTACTGGAAGCCGGGTGACAGTATGGATGCCCAGCATCCGGTGCTGAAAAAAGAACCATACATTGTGGTGTTGGTTGACGAATTTGCCGACCTGATGATGACGGTAGGTAAAAAAGTGGAAGAGCTGATAGCACGTCTGGCGCAAAAAGCCCGTGCCGCGGGTATCCACCTCGTAC  >  NC_000913/936413‑936683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A