Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,002,950	T→C	V21A (GTC→GCC)	ycbU →	putative fimbrial protein YcbU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,002,950	0	T	C	100.0%	282.8 / NA	74	V21A (GTC→GCC)	ycbU	putative fimbrial protein YcbU
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (21/53); total (21/53)

CAGGTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGTCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCG  >  NC_000913/1002813‑1003086

cAGGTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCg                                                                                                                                        >  2:480080/1‑140 (MQ=255)

cAGGTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCg                                                                                                                                        >  1:1331616/1‑140 (MQ=255)

 aGGTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCgg                                                                                                                                       >  1:1045285/1‑140 (MQ=255)

 aGGTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCgg                                                                                                                                       >  1:432205/1‑140 (MQ=255)

  ggTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCggg                                                                                                                                      <  2:626196/140‑1 (MQ=255)

  ggTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCggg                                                                                                                                      <  1:77127/140‑1 (MQ=255)

  ggTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCggg                                                                                                                                      <  1:346051/140‑1 (MQ=255)

       tccaccaGAAACCGGGCGATTTGATGCCACGGCAGCGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGc                                                                                                                                 <  2:1335972/139‑1 (MQ=255)

        ccaccaGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCt                                                                                                                                >  1:713792/1‑140 (MQ=255)

            caGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGc                                                                                                                            <  2:757796/140‑1 (MQ=255)

            caGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGACTGGGc                                                                                                                            <  2:99490/140‑1 (MQ=255)

             aGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGcc                                                                                                                           >  1:917386/1‑140 (MQ=255)

              gAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCt                                                                                                                          >  1:1142942/1‑140 (MQ=255)

              gAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCt                                                                                                                          >  2:763100/1‑140 (MQ=255)

                aaCCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGa                                                                                                                        <  1:1139332/140‑1 (MQ=255)

                 aCCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGaa                                                                                                                       <  1:1449009/140‑1 (MQ=255)

                 aCCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGaa                                                                                                                       <  2:848547/140‑1 (MQ=255)

                  ccGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAAc                                                                                                                      <  2:540489/140‑1 (MQ=255)

                      gCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGt                                                                                                                  <  2:503766/140‑1 (MQ=255)

                      gCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGt                                                                                                                  <  2:468383/140‑1 (MQ=255)

                      gCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGt                                                                                                                  <  1:1118705/140‑1 (MQ=255)

                       cGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGtt                                                                                                                 <  2:949688/140‑1 (MQ=255)

                       cGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGtt                                                                                                                 <  1:887273/140‑1 (MQ=255)

                        gATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTa                                                                                                                <  2:254684/140‑1 (MQ=255)

                        gATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTa                                                                                                                <  2:43360/140‑1 (MQ=255)

                        gATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTa                                                                                                                <  2:1045285/140‑1 (MQ=255)

                         aTTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAg                                                                                                               <  2:1339092/140‑1 (MQ=255)

                         aTTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAg                                                                                                               <  2:708839/140‑1 (MQ=255)

                          tttGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGt                                                                                                              <  1:264829/140‑1 (MQ=255)

                            tGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTAt                                                                                                            <  1:1206219/140‑1 (MQ=255)

                             gAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATg                                                                                                           >  1:212485/1‑140 (MQ=255)

                              aaGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGc                                                                                                          <  2:467046/140‑1 (MQ=255)

                              aaGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGc                                                                                                          <  2:1431880/140‑1 (MQ=255)

                              aaGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGc                                                                                                          <  2:16871/140‑1 (MQ=255)

                               aGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCa                                                                                                         <  2:97844/140‑1 (MQ=255)

                                     ggCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTa                                                                                                   <  2:987601/140‑1 (MQ=255)

                                     ggCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTATTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTa                                                                                                   >  2:1314415/1‑140 (MQ=255)

                                      gCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTAt                                                                                                  <  2:483700/140‑1 (MQ=255)

                                      gCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTAt                                                                                                  <  2:38912/140‑1 (MQ=255)

                                      gCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTAt                                                                                                  <  1:480080/140‑1 (MQ=255)

                                           ggTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGaa                                                                                             <  2:427756/140‑1 (MQ=255)

                                             tGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAAtg                                                                                           >  1:1497625/1‑140 (MQ=255)

                                               agaATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAAtgtg                                                                                         <  1:1403573/140‑1 (MQ=255)

                                                gaATAAATTTTGATTACCGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGACCAAGTTAGTATGCATATTTATGGGAATGTgg                                                                                        <  2:829759/140‑1 (MQ=255)

                                                gaATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTgg                                                                                        <  2:926355/140‑1 (MQ=255)

                                                     aaTTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGAt                                                                                   <  1:1020215/140‑1 (MQ=255)

                                                     aaTTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGAt                                                                                   <  2:655769/140‑1 (MQ=255)

                                                     aaTTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGAt                                                                                   <  1:884648/140‑1 (MQ=255)

                                                      aTTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATc                                                                                  <  1:771400/140‑1 (MQ=255)

                                                               aaCGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTTGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCtgtg                                                                         <  2:1101022/140‑1 (MQ=255)

                                                                  gcgTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGTTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATg                                                                      <  1:683138/140‑1 (MQ=255)

                                                                      gAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGc                                                                  <  2:1331616/140‑1 (MQ=255)

                                                                            aTGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCaa                                                            >  2:1258819/1‑140 (MQ=255)

                                                                             tGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCaaa                                                           >  1:155216/1‑140 (MQ=255)

                                                                              gaagaaAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCaaaa                                                          <  2:1101606/140‑1 (MQ=255)

                                                                                 gaaAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTg                                                       <  2:316635/140‑1 (MQ=255)

                                                                                    aaaaaCGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCAt                                                    >  1:1278710/1‑140 (MQ=255)

                                                                                        aCGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACa                                                <  2:432205/140‑1 (MQ=255)

                                                                                        aCGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACa                                                <  2:135191/140‑1 (MQ=255)

                                                                                            tatTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAat                                            >  2:1412645/1‑140 (MQ=255)

                                                                                              tttCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAatat                                          <  1:1138827/140‑1 (MQ=255)

                                                                                                      cGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTg                                  >  2:395544/1‑140 (MQ=255)

                                                                                                      cGTTATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTg                                  <  1:763100/140‑1 (MQ=255)

                                                                                                        ttATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGt                                <  1:1091933/140‑1 (MQ=255)

                                                                                                         tATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTg                               <  2:899858/140‑1 (MQ=255)

                                                                                                         tATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTg                               <  2:917386/140‑1 (MQ=255)

                                                                                                         tATCTTGTTCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTg                               <  2:424168/140‑1 (MQ=255)

                                                                                                                ttCTTTAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTaa                        >  1:507735/1‑140 (MQ=255)

                                                                                                                   tttAGCATTCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAatat                     <  2:1142942/140‑1 (MQ=255)

                                                                                                                          ttCTTAACATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGAt              >  2:87383/1‑140 (MQ=255)

                                                                                                                               aaCATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCa         >  2:306028/1‑140 (MQ=255)

                                                                                                                                aCATCCATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAg        <  2:1497625/140‑1 (MQ=255)

                                                                                                                                     cATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCcgc   >  1:551732/1‑140 (MQ=255)

                                                                                                                                     cATGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCcgc   >  2:407456/1‑140 (MQ=255)

                                                                                                                                      aTGCCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCcgcg  <  2:713792/140‑1 (MQ=255)

CAGGTGTACCACCAGAAACCGGGCGATTTGAAGCCACGGCAACGGTGAGAATAAATTTTGATTAACGCGTGAACGTATGAAGAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGTCGGGATGGCTGGGCCTGAACAAGTTAGTATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGATTTTAATATCAGTGATTTTCAGGCCGCG  >  NC_000913/1002813‑1003086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A