Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,377,805	A→G	D325G (GAC→GGC)	ycjS →	putative oxidoreductase YcjS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,377,805	0	A	G	100.0%	291.7 / NA	78	D325G (GAC→GGC)	ycjS	putative oxidoreductase YcjS
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (48/30); total (48/30)

CACATATCTACACCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGACGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTGAACAAGT  >  NC_000913/1377673‑1377941

cacaTTTCAACCCCAAAAACAACGGTAAATTAATGCCGCGGATGCAAGGGAAAATAGCAGCCGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAg                                                                                                                                   <  2:479195/140‑1 (MQ=255)

 ccaTATCTACACCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGCCGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGc                                                                                                                                  <  2:1322207/139‑1 (MQ=255)

   atatCTACACCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAg                                                                                                                                >  1:862044/1‑140 (MQ=255)

     atCTACACCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAggg                                                                                                                              >  1:863349/1‑140 (MQ=255)

     atCTACACCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAggg                                                                                                                              >  1:903933/1‑140 (MQ=255)

     atCTACACCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAggg                                                                                                                              >  1:9419/1‑140 (MQ=255)

          ctccGATAACAGCGGTAAATTATTGAGGTTGATGCACCGGAAAATAGCCAACAAAAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTAca                                                                                                                         <  2:599178/138‑1 (MQ=255)

          cacCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTAca                                                                                                                         >  2:842438/1‑140 (MQ=255)

            ccGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTAcatc                                                                                                                       >  2:1413922/1‑140 (MQ=255)

             cGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTAcatca                                                                                                                      >  1:528825/1‑140 (MQ=255)

             cGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTAcatca                                                                                                                      >  1:291778/1‑140 (MQ=255)

              gATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTAcatcat                                                                                                                     >  1:328344/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  1:561261/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  2:511610/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  1:892766/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  2:876465/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  1:1358326/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  2:361338/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  1:531414/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  2:717534/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  2:800992/1‑140 (MQ=255)

               aTAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACatcatc                                                                                                                    >  2:822828/1‑140 (MQ=255)

                    aacGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCa                                                                                                               >  1:1454291/1‑140 (MQ=255)

                       ggTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACt                                                                                                            >  2:365629/1‑140 (MQ=255)

                         tGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATTATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACtgg                                                                                                          >  1:1253353/1‑140 (MQ=255)

                         tGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACtgg                                                                                                          >  1:560396/1‑140 (MQ=255)

                           aaTTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACtggtg                                                                                                        >  2:1426579/1‑140 (MQ=255)

                            aTTAATGCCGCTGATGCAGGGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACtggtgg                                                                                                       <  2:1410243/140‑1 (MQ=255)

                                       tGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTAt                                                                                            >  2:523363/1‑140 (MQ=255)

                                          tGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCaa                                                                                         >  1:1168588/1‑140 (MQ=255)

                                          tGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCaa                                                                                         >  1:733001/1‑140 (MQ=255)

                                              aCGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCg                                                                                     <  2:512757/140‑1 (MQ=255)

                                                 ggAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAg                                                                                  <  2:468375/140‑1 (MQ=255)

                                                   aaaTAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATTAATCCGCAGaa                                                                                >  1:77533/1‑140 (MQ=255)

                                                         cAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAggg                                                                          >  1:669742/1‑140 (MQ=255)

                                                          aGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGa                                                                         <  2:560396/140‑1 (MQ=255)

                                                          aGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGa                                                                         <  2:561261/140‑1 (MQ=255)

                                                             cgacAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGAcgc                                                                      >  1:702457/1‑140 (MQ=255)

                                                              gacAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGAcgcg                                                                     >  2:1355655/1‑140 (MQ=255)

                                                                 aaCCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCgtgt                                                                  <  1:361338/140‑1 (MQ=255)

                                                                  aCCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGtgtg                                                                 <  2:123274/140‑1 (MQ=255)

                                                                  aCCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGtgtg                                                                 <  2:1371743/140‑1 (MQ=255)

                                                                  aCCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGtgtg                                                                 <  2:863349/140‑1 (MQ=255)

                                                                  aCCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGtgtg                                                                 <  2:1358326/140‑1 (MQ=255)

                                                                      ccATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAAt                                                             <  2:1168588/140‑1 (MQ=255)

                                                                       cATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAAtt                                                            <  2:1158603/140‑1 (MQ=255)

                                                                            gcgcAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGAc                                                       <  2:862044/140‑1 (MQ=255)

                                                                             cgcAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGAcc                                                      <  2:1253353/140‑1 (MQ=255)

                                                                              gcagcaTGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCa                                                     <  1:717534/140‑1 (MQ=255)

                                                                              gcagcaTGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCa                                                     <  1:1355655/140‑1 (MQ=255)

                                                                                  caTGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGcc                                                 >  1:293239/1‑140 (MQ=255)

                                                                                       aaGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTaa                                            >  1:510730/1‑140 (MQ=255)

                                                                                               atcaatcaCGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCa                                    >  2:249067/1‑140 (MQ=255)

                                                                                                       cGTACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACTAGGCCAGTAACGTTATCAGAACCCCa                            >  1:808294/1‑140 (MQ=255)

                                                                                                         tACAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCAtt                          <  1:531302/140‑1 (MQ=255)

                                                                                                          aCAGGGCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCAttt                         >  2:937709/1‑140 (MQ=255)

                                                                                                             gggCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTcag                      <  2:923797/140‑1 (MQ=255)

                                                                                                             gggCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTcag                      <  2:539400/140‑1 (MQ=255)

                                                                                                              ggCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCACCTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTcagc                     >  2:1114345/1‑140 (MQ=255)

                                                                                                              ggCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTcagc                     >  1:931131/1‑140 (MQ=255)

                                                                                                              ggCAAGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTcagc                     >  1:1074274/1‑140 (MQ=255)

                                                                                                                  aGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTcagccagc                 <  2:688895/140‑1 (MQ=255)

                                                                                                                  aGCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTcagccagc                 <  1:365629/140‑1 (MQ=255)

                                                                                                                   gCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCa                <  1:842438/140‑1 (MQ=255)

                                                                                                                   gCCCGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCa                >  2:774923/1‑140 (MQ=255)

                                                                                                                      cGTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGAATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCTTAc             >  2:1490294/1‑140 (MQ=255)

                                                                                                                       gTGATGATAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCTGAACCCCATTTCAGCCAGCATAcc            <  2:528825/140‑1 (MQ=255)

                                                                                                                        tgatgaTAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATAccc           >  1:1262014/1‑140 (MQ=255)

                                                                                                                        tgatgaTAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATAccc           >  2:949420/1‑140 (MQ=255)

                                                                                                                        tgatgaTAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATAccc           >  1:676649/1‑140 (MQ=255)

                                                                                                                        tgatgaTAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATAccc           >  2:106545/1‑140 (MQ=255)

                                                                                                                        tgatgaTAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATAccc           >  2:1107867/1‑140 (MQ=255)

                                                                                                                         gatgatAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCt          >  2:968686/1‑140 (MQ=255)

                                                                                                                          atgatAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATTAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTg         <  2:77533/140‑1 (MQ=255)

                                                                                                                            gatAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTGaa       <  2:892766/140‑1 (MQ=255)

                                                                                                                            gatAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTGaa       <  2:1454291/140‑1 (MQ=255)

                                                                                                                             atAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTGAAc      >  1:418422/1‑140 (MQ=255)

                                                                                                                             atAGCCGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTGAAc      <  2:669742/140‑1 (MQ=255)

                                                                                                                                 ccGGCGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTGAACAAGt  <  1:822828/140‑1 (MQ=255)

CACATATCTACACCGATAACAACGGTGAATTAATGACGCTGATGCAACGGGAAATAGCAGACGACAACCGCCATTTGCGCAGCATGGAAGCCTTTATCAATCACGTACAGGGCAAGCCCGTGATGATAGCCGACGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGACGCGTGTGGAATTATGACCAGGCCAGTAACGTTATCAGAACCCCATTTCAGCCAGCATACCCTGAACAAGT  >  NC_000913/1377673‑1377941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A