Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,906,993 T→C Q23R (CAG→CGG)  rlmA ← 23S rRNA m(1)G745 methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,906,9930TC100.0% 342.3 / NA 90Q23R (CAG→CGG) rlmA23S rRNA m(1)G745 methyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (57/33);  total (57/33)

TGATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCTGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCGAA  >  NC_000913/1906858‑1907127
                                                                                                                                       |                                                                                                                                      
tGATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCgggg                                                                                                                                    <  2:1350635/140‑1 (MQ=255)
 gATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCACGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGa                                                                                                                                   <  1:123592/140‑1 (MQ=255)
            gCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCt                                                                                                                        >  2:1048713/1‑140 (MQ=255)
            gCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCt                                                                                                                        >  1:40811/1‑140 (MQ=255)
             cATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTg                                                                                                                       >  2:1437564/1‑140 (MQ=255)
                cTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAG‑‑CGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGttttt                                                                                                                  >  2:1263499/1‑140 (MQ=255)
                       tGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAc                                                                                                             <  1:475033/140‑1 (MQ=255)
                       tGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAc                                                                                                             >  2:449129/1‑140 (MQ=255)
                        gcgcGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAcg                                                                                                            <  2:1214098/140‑1 (MQ=255)
                        gcgcGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAcg                                                                                                            <  2:1492447/140‑1 (MQ=255)
                         cgcgGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAcgc                                                                                                           >  2:639718/1‑140 (MQ=255)
                         cgcgGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAcgc                                                                                                           >  2:1168228/1‑140 (MQ=255)
                         cgcgGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAcgc                                                                                                           >  2:764953/1‑140 (MQ=255)
                         cgcgGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAcgc                                                                                                           >  2:357349/1‑140 (MQ=255)
                         cgcgGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCAcgc                                                                                                           >  2:1025088/1‑140 (MQ=255)
                          gcggcgTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATA‑AGCTGTTTTTTTCACGCGa                                                                                                         >  2:894387/1‑140 (MQ=255)
                              cgTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAag                                                                                                      >  1:1362972/1‑140 (MQ=255)
                               gTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAaga                                                                                                     >  2:1443090/1‑140 (MQ=255)
                               gTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAaga                                                                                                     >  2:1363552/1‑140 (MQ=255)
                               gTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAaga                                                                                                     >  2:1453988/1‑140 (MQ=255)
                                   ttGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCt                                                                                                 <  1:721123/140‑1 (MQ=255)
                                   ttGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTGCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCt                                                                                                 <  2:1122174/140‑1 (MQ=255)
                                       atcatTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATg                                                                                             <  2:822897/140‑1 (MQ=255)
                                        tcatTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATgg                                                                                            <  2:671317/140‑1 (MQ=255)
                                           tttCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCaa                                                                                         >  1:378701/1‑140 (MQ=255)
                                            ttCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCaaa                                                                                        >  1:755880/1‑140 (MQ=255)
                                               cgcgCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTg                                                                                     >  2:1005640/1‑140 (MQ=255)
                                                  gcTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGAc                                                                                  <  2:1399126/140‑1 (MQ=255)
                                                  gcTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGAc                                                                                  <  1:132251/140‑1 (MQ=255)
                                                  gcTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGAc                                                                                  <  1:1168228/140‑1 (MQ=255)
                                                   cTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACCGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACa                                                                                 >  1:498510/1‑140 (MQ=255)
                                                          ccGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGaaaaa                                                                          <  2:1025605/140‑1 (MQ=255)
                                                              aTCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATCGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACa                                                                      >  2:658991/1‑140 (MQ=255)
                                                                cACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATg                                                                    >  1:609214/1‑140 (MQ=255)
                                                                  cGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGAc                                                                  <  1:948879/140‑1 (MQ=255)
                                                                       ccGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTc                                                             <  2:40811/140‑1 (MQ=255)
                                                                        cGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGCGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTcc                                                            >  1:898190/1‑140 (MQ=255)
                                                                        cGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTcc                                                            >  2:110394/1‑140 (MQ=255)
                                                                        cGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTcc                                                            >  1:365746/1‑140 (MQ=255)
                                                                        cGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTcc                                                            <  2:172285/140‑1 (MQ=255)
                                                                          tttATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAGGTGGACAGGAAAAAGACATGACAACTCCgg                                                          >  2:1365154/1‑140 (MQ=255)
                                                                          tttATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCgg                                                          <  2:451439/140‑1 (MQ=255)
                                                                          tttATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCgg                                                          >  1:936453/1‑140 (MQ=255)
                                                                          tttATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCgg                                                          <  1:357349/140‑1 (MQ=255)
                                                                          tttATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCgg                                                          <  1:1263499/140‑1 (MQ=255)
                                                                          tttATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCgg                                                          <  1:5886/140‑1 (MQ=255)
                                                                          tttATGCTGAACGGGAAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCgg                                                          <  2:788344/140‑1 (MQ=255)
                                                                            tATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCa                                                        <  1:546580/140‑1 (MQ=255)
                                                                                  gAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATAc                                                  >  2:1396233/1‑140 (MQ=255)
                                                                                   aaCGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACt                                                 >  1:1224449/1‑140 (MQ=255)
                                                                                   aaCGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACt                                                 >  1:528776/1‑140 (MQ=255)
                                                                                    aCGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTa                                                >  1:1197994/1‑140 (MQ=255)
                                                                                       ggCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAg                                             <  1:764953/140‑1 (MQ=255)
                                                                                        gcagcaGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAgg                                            >  2:841571/1‑140 (MQ=255)
                                                                                         cagcagATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGc                                           <  1:530178/140‑1 (MQ=255)
                                                                                          agcagATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGcc                                          >  2:1487786/1‑140 (MQ=255)
                                                                                           gcagATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCg                                         <  1:1025088/140‑1 (MQ=255)
                                                                                             agATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCa                                       >  1:1314469/1‑140 (MQ=255)
                                                                                              gATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCaa                                      <  2:1362972/140‑1 (MQ=255)
                                                                                                ttGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAgt                                    <  1:841571/140‑1 (MQ=255)
                                                                                                 tGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAgtg                                   >  1:26443/1‑140 (MQ=255)
                                                                                                  gACATACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAgtgt                                  >  1:434293/1‑140 (MQ=255)
                                                                                                      tACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAAcg                              >  1:702193/1‑140 (MQ=255)
                                                                                                      tACCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAAcg                              >  1:1497980/1‑140 (MQ=255)
                                                                                                       aCCCTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAAcgc                             <  1:1005640/140‑1 (MQ=255)
                                                                                                         ccTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGa                           >  1:512522/1‑140 (MQ=255)
                                                                                                         ccTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGa                           >  2:1040210/1‑140 (MQ=255)
                                                                                                         ccTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGa                           >  1:1311663/1‑140 (MQ=255)
                                                                                                         ccTTCTTTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGa                           >  2:1464477/1‑140 (MQ=255)
                                                                                                           ttcttTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAAt                         >  1:883888/1‑140 (MQ=255)
                                                                                                           ttcttTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAAt                         >  1:1015184/1‑140 (MQ=255)
                                                                                                             cttTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCa                       >  2:468392/1‑140 (MQ=255)
                                                                                                             cttTCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCa                       >  1:1253821/1‑140 (MQ=255)
                                                                                                               ttCGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCAcg                     <  2:777788/140‑1 (MQ=255)
                                                                                                                 cGCCATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCAcgcg                   >  2:570838/1‑140 (MQ=255)
                                                                                                                   ccATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACgcggc                 >  1:142351/1‑140 (MQ=255)
                                                                                                                   ccATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACgcggc                 <  2:1335639/140‑1 (MQ=255)
                                                                                                                   ccATATCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACgcggc                 >  1:22864/1‑140 (MQ=255)
                                                                                                                       atCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGc             <  1:1363552/140‑1 (MQ=255)
                                                                                                                       atCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGc             >  1:2191/1‑140 (MQ=255)
                                                                                                                       atCAAACTGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGc             >  1:224291/1‑140 (MQ=255)
                                                                                                                              tGATGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATc      <  1:449129/140‑1 (MQ=255)
                                                                                                                                aTGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGTGGGCAAATATCCg    <  2:609214/140‑1 (MQ=255)
                                                                                                                                aTGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCg    >  1:224221/1‑140 (MQ=255)
                                                                                                                                aTGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCg    >  2:831376/1‑140 (MQ=255)
                                                                                                                                 tGTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCGa   >  1:595009/1‑140 (MQ=255)
                                                                                                                                  gTCGCCGGGGGCAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCGaa  >  1:184247/1‑140 (MQ=255)
                                                                                                                                  gTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCGaa  >  2:336938/1‑140 (MQ=255)
                                                                                                                                  gTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCGaa  >  2:547079/1‑140 (MQ=255)
                                                                                                                                  gTCGCCGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCGaa  >  1:659470/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
TGATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCTGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAAATATCCGAA  >  NC_000913/1906858‑1907127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A