Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,933,861 A→G H248H (CAT→CAC)  edd ← phosphogluconate dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,933,8610AG100.0% 250.0 / NA 68H248H (CAT→CAC) eddphosphogluconate dehydratase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (26/42);  total (26/42)

AGTGCAACGATACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGATGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACTCCAGTAAGGCCATGCGG  >  NC_000913/1933724‑1933996
                                                                                                                                         |                                                                                                                                       
agTGCAACGATACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTg                                                                                                                                       <  1:696745/140‑1 (MQ=255)
agTGCAACGATACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTg                                                                                                                                       <  1:1314092/140‑1 (MQ=255)
          tACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAaagaa                                                                                                                             <  1:612730/140‑1 (MQ=255)
             cGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAagag                                                                                                                          <  2:88500/140‑1 (MQ=255)
               ttCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCCCGCAGCGGGGAATCCGGGGGAACAAaagaaggacc                                                                                                                        >  2:361786/1‑136 (MQ=255)
                 caccaccacTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGGGAACAAAAGAAGAGCCTg                                                                                                                      >  2:793093/1‑140 (MQ=255)
                   ccaccacTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGc                                                                                                                    <  2:1233141/140‑1 (MQ=255)
                    caccacTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAACATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAAAGCCTGGCa                                                                                                                   >  1:1214214/1‑140 (MQ=255)
                         cTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGc                                                                                                              >  1:106749/1‑140 (MQ=255)
                          tttCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCa                                                                                                             <  2:1051384/140‑1 (MQ=255)
                          tttCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCa                                                                                                             <  2:752249/140‑1 (MQ=255)
                                aTCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCa                                                                                                       >  2:722016/1‑140 (MQ=255)
                                 tCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCaa                                                                                                      >  2:1471887/1‑139 (MQ=255)
                                 tCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGGGAACAAAAGAAGAGCCTGGCAACTGCATCCCCaa                                                                                                      >  2:420393/1‑139 (MQ=255)
                                  cGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATa                                                                                                     <  1:495975/140‑1 (MQ=255)
                                  cGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATa                                                                                                     <  1:508203/140‑1 (MQ=255)
                                   gATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGGGAACAAAAGAAGGGCCTGGCAACTGCATCCCCCTaa                                                                                                    >  2:1222498/1‑140 (MQ=255)
                                        tcTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTcc                                                                                               >  1:652124/1‑140 (MQ=255)
                                         cTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTcca                                                                                              <  2:1489757/140‑1 (MQ=255)
                                            aCCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTccaccc                                                                                           >  2:696821/1‑139 (MQ=255)
                                               gATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTccaccacca                                                                                        <  2:1166408/140‑1 (MQ=255)
                                                aTCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCCCCACCAt                                                                                       >  2:420644/1‑140 (MQ=255)
                                                aTCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCAt                                                                                       <  2:1407961/140‑1 (MQ=255)
                                                aTCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCAt                                                                                       >  2:1316007/1‑140 (MQ=255)
                                                 tCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATc                                                                                      <  2:828951/140‑1 (MQ=255)
                                                  cGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCt                                                                                     >  1:667160/1‑140 (MQ=255)
                                                   ggCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCCGCGGAGAATCCGGGTGAACAAAAAAAGAGCCTGGCAACTGCATCCCCATAAACTCCCCCCCCCTCtg                                                                                    >  2:55162/1‑140 (MQ=255)
                                                   ggCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCCCGCAGCGGAGAAACCGGGTGCACAAAAGGAGAGCCTGGCAACTGCATCCCCATAAACCCCACCACCATCtg                                                                                    >  2:428510/1‑140 (MQ=255)
                                                       tCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCtggttg                                                                                <  2:792800/140‑1 (MQ=255)
                                                         cattcattACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCtggttggt                                                                              <  1:1090061/140‑1 (MQ=255)
                                                         cattcattACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCtggttggt                                                                              <  2:696485/140‑1 (MQ=255)
                                                         cattcattACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCtggttggt                                                                              <  1:919166/140‑1 (MQ=255)
                                                           ttcattACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGgtgt                                                                            <  2:899474/140‑1 (MQ=255)
                                                              attaccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTgg                                                                         <  2:1021877/140‑1 (MQ=255)
                                                              attaccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTgg                                                                         <  2:436411/140‑1 (MQ=255)
                                                              attaccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTgg                                                                         <  2:674180/140‑1 (MQ=255)
                                                              attaccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTgg                                                                         <  1:1045369/140‑1 (MQ=255)
                                                                taccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCa                                                                       <  1:1453273/140‑1 (MQ=255)
                                                                taccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCa                                                                       <  1:737530/140‑1 (MQ=255)
                                                                taccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCa                                                                       <  2:849983/140‑1 (MQ=255)
                                                                taccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCa                                                                       <  1:312713/140‑1 (MQ=255)
                                                                  ccattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGt                                                                     <  1:612773/140‑1 (MQ=255)
                                                                   cattaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGGGTTGGCAGTa                                                                    >  2:302623/1‑140 (MQ=255)
                                                                     ttaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGGGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGGTGGTGTTGGCAGGAcc                                                                  >  1:974940/1‑140 (MQ=255)
                                                                     ttaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCCCGCAGCGGAGAATCCGGGTGAACAAAACAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTAcc                                                                  >  2:756281/1‑140 (MQ=255)
                                                                     ttaccGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAACATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGGTGGCAGTAcc                                                                  >  1:485931/1‑140 (MQ=255)
                                                                       accGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGt                                                                <  2:335479/140‑1 (MQ=255)
                                                                       accGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCAACGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGGGTTGGCAGTAccct                                                                >  2:957150/1‑138 (MQ=255)
                                                                               tGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAgga                                                        >  1:324677/1‑138 (MQ=255)
                                                                                 cGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGGGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACa                                                      >  1:132966/1‑140 (MQ=255)
                                                                                 cGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCAACGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGGGTTGGCAGTACCGTAGAAAGGACa                                                      >  1:535289/1‑140 (MQ=255)
                                                                                      aaCCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCTCCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTc                                                 >  2:1328222/1‑140 (MQ=255)
                                                                                       aCCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTcc                                                <  2:652124/140‑1 (MQ=255)
                                                                                       aCCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTcc                                                <  1:420644/140‑1 (MQ=255)
                                                                                         cTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCg                                              <  2:667160/140‑1 (MQ=255)
                                                                                           gACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGgc                                            <  1:722016/140‑1 (MQ=255)
                                                                                           gACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGgc                                            <  2:1241955/140‑1 (MQ=255)
                                                                                            aCGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGgcg                                           <  1:899681/140‑1 (MQ=255)
                                                                                            aCGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGgcg                                           <  1:1108977/140‑1 (MQ=255)
                                                                                             cgcgCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCCGGGGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGGGTTGGCAGTACCGTAGAAAGAACATGTTCCCGgcgc                                          >  2:890407/1‑140 (MQ=255)
                                                                                              gcgcAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCa                                         <  1:361786/140‑1 (MQ=255)
                                                                                                          cggTCAAAGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGAcgcg                             <  2:446832/140‑1 (MQ=255)
                                                                                                              cAAAGCTTCGCGCAGCGGAGAATCCGGGGGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGGTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCtt                         >  1:918414/1‑140 (MQ=255)
                                                                                                                aaGCATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCt                       <  1:1222498/140‑1 (MQ=255)
                                                                                                                   cATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGAc                    <  1:696821/140‑1 (MQ=255)
                                                                                                                   cATCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGAc                    <  1:1468720/140‑1 (MQ=255)
                                                                                                                    aTCGCGCAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACt                   >  1:330264/1‑140 (MQ=255)
                                                                                                                      cgcgCAGCGGAGAATCCGGGAGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACTcc                 >  2:746282/1‑140 (MQ=255)
                                                                                                                       gcgcAGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACTCCa                >  1:784472/1‑140 (MQ=255)
                                                                                                                           aGCGGAGAATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACTCCAGTaa            >  2:401740/1‑140 (MQ=255)
                                                                                                                               gagaATCCGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACTCCAGTAAGGcc        <  1:756281/140‑1 (MQ=255)
                                                                                                                                     ccGGGTGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACTCCAGTAAGGCCATGCgg  <  1:677201/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
AGTGCAACGATACCGTTCACCACCACTTTCTCATCGATCATCTTACCGATCGGCATCCATTCATTACCATTACCGGTCATGCGTGTAACCTGACGCGCAGCTGCGGCGGTCAAAGCATCGCGCAGCGGAGAATCCGGATGAACAAAAGAAGAGCCTGGCAACTGCATCCCCATAAACTCCACCACCATCTGGTTGGTGTTGGCAGTACCGTAGAAAGTACATGTTCCCGGCGCATGGTAAGACGCGGCTTCTGACTCCAGTAAGGCCATGCGG  >  NC_000913/1933724‑1933996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A