Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,954,688 A→G S774P (TCG→CCG)  torZ ← trimethylamine N‑oxide reductase 2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,954,6880AG100.0% 265.4 / NA 71S774P (TCG→CCG) torZtrimethylamine N‑oxide reductase 2
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (46/25);  total (46/25)

CGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTCAAAAT  >  NC_000913/1954551‑1954823
                                                                                                                                         |                                                                                                                                       
cgcCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGc                                                                                                                                       <  1:846145/140‑1 (MQ=255)
cgcCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGc                                                                                                                                       <  2:1365173/140‑1 (MQ=255)
          cGGGCGCTATTCGCGTCTTACGCCTGAACAGCGGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATc                                                                                                                             <  1:957545/140‑1 (MQ=255)
            ggCGTTATCTACGTCTAACGCCTGAACAGCTGGTTGATCAAACGCTGTTACCTTCGTTGCATTGCCCGTATTTTTTTCAATATACACCACCGCTGAGTTACCGGCACAGGCATTTGCCAGTTGCGGGCTGGGGATATccg                                                                                                                           <  2:39515/140‑1 (MQ=255)
            ggCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATccg                                                                                                                           >  2:737477/1‑140 (MQ=255)
            ggCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATccg                                                                                                                           <  1:918395/140‑1 (MQ=255)
            ggCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATccg                                                                                                                           >  2:90103/1‑140 (MQ=255)
                 tATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGtt                                                                                                                      <  1:615420/140‑1 (MQ=255)
                 tATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGtt                                                                                                                      >  1:95999/1‑140 (MQ=255)
                         tCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGtt                                                                                                              >  2:910297/1‑140 (MQ=255)
                           ttACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCg                                                                                                            >  1:47488/1‑140 (MQ=255)
                             aCGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCa                                                                                                          >  1:577865/1‑140 (MQ=255)
                             aCGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCa                                                                                                          >  1:768776/1‑140 (MQ=255)
                             aCGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGATGGGGATATCCGCCGTTAACACGTTCGCa                                                                                                          >  1:539847/1‑140 (MQ=255)
                                    aaCAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGt                                                                                                   >  2:356007/1‑140 (MQ=255)
                                    aaCAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGt                                                                                                   >  1:1110912/1‑140 (MQ=255)
                                     aCAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTCCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGTCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGtt                                                                                                  <  1:1458312/140‑1 (MQ=255)
                                      cAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGttt                                                                                                 >  1:851490/1‑140 (MQ=255)
                                         ctggctgATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTa                                                                                              >  2:455033/1‑140 (MQ=255)
                                           ggctgATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTaca                                                                                            >  1:151936/1‑140 (MQ=255)
                                           ggctgATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTaca                                                                                            >  1:1468549/1‑140 (MQ=255)
                                               gATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACCCCACCGCTGAGTTACCGGCACAGGCTTTTCCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAg                                                                                        <  2:1173232/140‑1 (MQ=255)
                                                  cAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTAAGTTCCCGACACAGAATTTTGCCAGCTGCGGGTTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTCACACAAGCCa                                                                                     <  2:1212165/140‑1 (MQ=255)
                                                     aCGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCAttt                                                                                  >  1:131312/1‑140 (MQ=255)
                                                      cGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCAtttt                                                                                 >  1:1254638/1‑140 (MQ=255)
                                                       gCCGTTAACTTCGGTGCATTGCCCGTATTTTTTTCGATATCCCCCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTc                                                                                <  2:420418/140‑1 (MQ=255)
                                                       gCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTc                                                                                <  1:784467/140‑1 (MQ=255)
                                                          gTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAg                                                                             >  1:311443/1‑140 (MQ=255)
                                                                ttCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTgg                                                                       <  1:929046/140‑1 (MQ=255)
                                                                  cGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGcc                                                                     >  2:21287/1‑140 (MQ=255)
                                                                        aTTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCAc                                                               >  2:469588/1‑140 (MQ=255)
                                                                         ttGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCAcc                                                              >  2:776720/1‑140 (MQ=255)
                                                                          tGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCt                                                             >  1:1312251/1‑140 (MQ=255)
                                                                          tGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCt                                                             >  1:803880/1‑140 (MQ=255)
                                                                          tGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCt                                                             >  1:355933/1‑140 (MQ=255)
                                                                            cccGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTc                                                           >  1:1339923/1‑140 (MQ=255)
                                                                            cccGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTc                                                           >  1:1027284/1‑140 (MQ=255)
                                                                            cccGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGAACCTTc                                                           >  2:1083050/1‑140 (MQ=255)
                                                                             ccGTATCTTTTTCGATCTCCACCACCGCGGAGTTCCCGGCAAAGGCATTGGCCAGCTGCGGGCTGGGGATATCCGCCGCTAACACGTTCGCACTGCCGTTTTTACACAAGACATTTTCCAGATCTGGCCATGCGCCTTCa                                                          <  2:95999/140‑1 (MQ=255)
                                                                               gTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATg                                                        <  2:47488/140‑1 (MQ=255)
                                                                               gTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATg                                                        <  1:573351/140‑1 (MQ=255)
                                                                                      tttCAATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGTAt                                                 >  1:744790/1‑140 (MQ=255)
                                                                                          gATATCCACCAACGCTGAGTTCCCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCa                                             <  2:254767/140‑1 (MQ=255)
                                                                                            tataCACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACg                                           <  1:166173/140‑1 (MQ=255)
                                                                                                      cGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGa                                 >  1:374928/1‑140 (MQ=255)
                                                                                                      cGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGa                                 >  1:458704/1‑140 (MQ=255)
                                                                                                      cGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGa                                 >  1:222945/1‑140 (MQ=255)
                                                                                                      cGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGa                                 >  2:1303137/1‑140 (MQ=255)
                                                                                                      cGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGa                                 >  2:924719/1‑140 (MQ=255)
                                                                                                        cTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATc                               >  2:1335120/1‑140 (MQ=255)
                                                                                                        cTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATc                               >  2:174671/1‑140 (MQ=255)
                                                                                                        cTGAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATc                               >  2:1258918/1‑140 (MQ=255)
                                                                                                         ggAGTTACCGGCACAGGCATTTGCCGGCTGGGGGCTGGGGATATCCGCCGTTAGCACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATcc                              <  2:131312/139‑1 (MQ=255)
                                                                                                          gAGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATccc                             >  1:429209/1‑140 (MQ=255)
                                                                                                           ggTTCCCGGCACAGGCTTTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCg                            <  2:235550/139‑1 (MQ=255)
                                                                                                           aGTTACCGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCg                            >  2:49375/1‑140 (MQ=255)
                                                                                                                ccGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCgtcagt                       <  1:356007/140‑1 (MQ=255)
                                                                                                                ccGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCgtcagt                       <  2:768776/140‑1 (MQ=255)
                                                                                                                ccGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCgtcagt                       >  1:1147311/1‑140 (MQ=255)
                                                                                                                 cGGCACAGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCgtcagtc                      >  2:859486/1‑140 (MQ=255)
                                                                                                                     acaGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTcacca                  >  2:676808/1‑140 (MQ=255)
                                                                                                                       aGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCaccacc                >  2:1359689/1‑140 (MQ=255)
                                                                                                                       aGGCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCaccacc                >  2:555991/1‑140 (MQ=255)
                                                                                                                         gCATTTGTCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACcgc              >  1:983369/1‑140 (MQ=255)
                                                                                                                         gCATTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACcgc              >  2:755242/1‑140 (MQ=255)
                                                                                                                           aTTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCgcgc            <  1:570941/140‑1 (MQ=255)
                                                                                                                           aTTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCgcgc            <  1:448760/140‑1 (MQ=255)
                                                                                                                           aTTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCgcgc            <  1:737477/140‑1 (MQ=255)
                                                                                                                           aTTTGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCgcgc            <  1:90103/140‑1 (MQ=255)
                                                                                                                              tGCCAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTg         >  1:913683/1‑140 (MQ=255)
                                                                                                                                ccAGCTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTc       <  1:1083050/140‑1 (MQ=255)
                                                                                                                                    cTGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTCaaaa   >  2:236360/1‑140 (MQ=255)
                                                                                                                                     tGCGGGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCCTTTTTGATCCCGTCAGTCACCACCGCGCCTGTCAAAAt  <  1:776720/140‑1 (MQ=255)
                                                                                                                                     ggcgggcggGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTCAAAAt  <  2:312078/139‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAACACGTTCGCACTGCCGTTTTTACACAAGCCATTTTCCAGATCTGGCCATGCACCTTCATGCACGCATACCACGCCTTTTTTGATCCCGTCAGTCACCACCGCGCCTGTCAAAAT  >  NC_000913/1954551‑1954823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A