Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,546,031	A→G	T87A (ACC→GCC)	murQ →	N‑acetylmuramic acid 6‑phosphate etherase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,546,031	0	A	G	100.0%	206.7 / NA	55	T87A (ACC→GCC)	murQ	N‑acetylmuramic acid 6‑phosphate etherase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (23/32); total (23/32)

GTACTGCCGGATATCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCACCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTAATGATCTGAAAAATATTAATTTAACGGCAC  >  NC_000913/2545902‑2546166

gTACTGCCGGATATCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGt                                                                                                                               <  1:177846/140‑1 (MQ=255)

gTACTGCCGGATATCGCCGCGGCGATCGATGTTATCCACGCCCAGGAAAGCGGCGGCGGGCGTCTGATTTCCCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAGTGTCCGCCCGCCTACGGCGt                                                                                                                               <  2:900737/140‑1 (MQ=255)

 tACTGCCGGATATCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGGCCACGGCGTg                                                                                                                              >  2:512802/1‑140 (MQ=255)

   cTGCCGGATATCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGaa                                                                                                                            <  1:433289/140‑1 (MQ=255)

      ccGGATATCGCCGCGGCGATCGATGTTATCCGCGCCCAGGTAGGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACACCGGGTCGTCGGGGGATTCGGGAGGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAAcc                                                                                                                         <  2:803009/140‑1 (MQ=255)

        ggATATCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCgg                                                                                                                       <  2:349009/140‑1 (MQ=255)

           tatCGCCGCGGCGATCATTGTTATCCACGCCCGGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTc                                                                                                                    <  2:217771/140‑1 (MQ=255)

             tCGCCGCGGCGTTTGATGTTATCCCCGCCCTGGATAGCGGTGGTGGGCATCTGATTTACCTCGGTGCGGGAGCATCCGGTCGTCTGGGGATTCTGGATGCCAGCGATTGTCCGCCCGCCTACGGCGTGAAACCGGGTCtg                                                                                                                  <  2:965899/140‑1 (MQ=255)

             tCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCtg                                                                                                                  >  1:1253639/1‑140 (MQ=255)

             tCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCtg                                                                                                                  >  1:678372/1‑140 (MQ=255)

              cgccgcGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCtgg                                                                                                                 >  2:1174123/1‑140 (MQ=255)

                ccgcGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCtggtg                                                                                                               >  1:1440508/1‑140 (MQ=255)

                ccgcGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCtggtg                                                                                                               >  2:1418188/1‑140 (MQ=255)

                  gcggcgTTCGATGTTATCCAGGCCCAGGTAGGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTGGTTTGGGGATTCTGGGTGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTggtggt                                                                                                             <  2:101130/140‑1 (MQ=255)

                        atcgatGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGttt                                                                                                       >  1:541877/1‑140 (MQ=255)

                             tGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTg                                                                                                  <  1:34960/140‑1 (MQ=255)

                                 aTCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTgg                                                                                              >  1:914674/1‑140 (MQ=255)

                                  tCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTggc                                                                                             <  1:134720/140‑1 (MQ=255)

                                  tCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTggc                                                                                             >  2:1014003/1‑140 (MQ=255)

                                  cccACGCCCGGGTAGGCGGCGGCGGGCGTCTGATTACCCTCGGTGCGGGACCATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTggc                                                                                             <  2:1204617/139‑1 (MQ=255)

                                   ccccGCCGAGGTAAGCGGGGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCGGGTCGTCGGGGGATTCTGGATGCCAGCGAATGCCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTggcg                                                                                            <  2:695901/137‑1 (MQ=255)

                                     ccGCCCGGGTAGGCGGCGGGGGGCGTCTGATTTCCCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTggcggc                                                                                          <  2:1108606/139‑1 (MQ=255)

                                       gCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGgcggcgg                                                                                        >  1:423175/1‑139 (MQ=255)

                                       gCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGa                                                                                        >  2:272957/1‑140 (MQ=255)

                                         ccAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGGTTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGGGAAAGCGGGTCGGGTGGGTGGGTTGATTGACAGCGGCTAat                                                                                      >  2:1152675/1‑140 (MQ=255)

                                         ccAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAat                                                                                      <  1:369302/140‑1 (MQ=255)

                                            ggTAGGCGGCGGCGGGCGTCTGATTNNCCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGCCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATg                                                                                   <  2:74200/140‑1 (MQ=255)

                                            ggTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATg                                                                                   <  1:63966/140‑1 (MQ=255)

                                            ggTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCGGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATg                                                                                   <  2:619942/140‑1 (MQ=255)

                                             gTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGc                                                                                  >  2:1254594/1‑140 (MQ=255)

                                                 gcggcggcgGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCAtt                                                                              >  2:474019/1‑140 (MQ=255)

                                                 gcggcggcgGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCAtt                                                                              >  2:350998/1‑140 (MQ=255)

                                                     cggcggGCGTCTGATTTCCCTCGGTGCGGGAACATCAGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGc                                                                          <  1:1290433/140‑1 (MQ=255)

                                                       gcgggcgTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCAc                                                                        >  1:891135/1‑140 (MQ=255)

                                                       gcgggcgTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCAc                                                                        >  1:849232/1‑140 (MQ=255)

                                                       gcgggcgTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCAc                                                                        >  2:902350/1‑140 (MQ=255)

                                                        cgggcgTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCAcg                                                                       >  2:974297/1‑140 (MQ=255)

                                                                     tACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGgcgc                                                          >  2:959133/1‑140 (MQ=255)

                                                                      aCCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGcgcg                                                         <  1:1014003/140‑1 (MQ=255)

                                                                       ccTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCgg                                                        >  1:995811/1‑140 (MQ=255)

                                                                            gTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGAt                                                   >  2:738804/1‑140 (MQ=255)

                                                                            gTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGCGGAAGGCGCGGAAGAt                                                   >  1:457294/1‑140 (MQ=255)

                                                                              gCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAg                                                 <  1:1012799/140‑1 (MQ=255)

                                                                                   aaCATCCGGCCGTCGGGGGATTCGGGATGCCCGGGATGGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCggg                                            <  2:245430/140‑1 (MQ=255)

                                                                                     cATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGaa                                          <  1:1022705/140‑1 (MQ=255)

                                                                                       tCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAgg                                        <  2:1307173/140‑1 (MQ=255)

                                                                                       tCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAgg                                        <  2:541877/140‑1 (MQ=255)

                                                                                       tCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAgg                                        <  2:914674/140‑1 (MQ=255)

                                                                                       tCCGGTCGGCGGGGGATTCTGGCTGCCCGCCAATGCCCCCCCGCCTACGGCGTGAAACCGGGTCTGGTGCTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAgg                                        <  1:512802/140‑1 (MQ=255)

                                                                                       cccGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAgg                                        <  1:207258/139‑1 (MQ=255)

                                                                                        ccGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGc                                       <  1:198733/140‑1 (MQ=255)

                                                                                          ggTCGTGTGGGGATTCTGGATGCCAGCGAATGCCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCgg                                     <  2:1183389/140‑1 (MQ=255)

                                                                                               tcTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTa                                <  1:1254594/140‑1 (MQ=255)

                                                                                               tcTGGGGATTCTGGATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTa                                >  1:105071/1‑140 (MQ=255)

                                                                                                          gggttGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTAATGATCTGaaa                     <  2:685444/136‑1 (MQ=255)

                                                                                                          gggATGCCAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTAATGATCTGaaa                     <  1:155147/139‑1 (MQ=255)

                                                                                                                ccAGCGAATGTCCGCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTAATGATCTGAAAAATAtt               >  2:978026/1‑140 (MQ=255)

                                                                                                                           ccgcccgcCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTAATGATCTGAAAAATATTAATTTAACGGc    <  2:849232/140‑1 (MQ=255)

                                                                                                                             gCCCGCCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTAATGATCTGAAAAATATTAATTTAACGGcac  <  2:105071/140‑1 (MQ=255)

GTACTGCCGGATATCGCCGCGGCGATCGATGTTATCCACGCCCAGGTAAGCGGCGGCGGGCGTCTGATTTACCTCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCACCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGCGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCGGAAGATAGCCGGGAAGGCGGTGTTAATGATCTGAAAAATATTAATTTAACGGCAC  >  NC_000913/2545902‑2546166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A