Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 124 90.1 3003320 99.2% 2979293 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,962,357 T→C E24E (GAA→GAG)  recC ← exodeoxyribonuclease V subunit RecC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,962,3570TC100.0% 276.4 / NA 73E24E (GAA→GAG) recCexodeoxyribonuclease V subunit RecC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (27/46);  total (27/46)

GATAAAGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCC  >  NC_000913/2962222‑2962490
                                                                                                                                        |                                                                                                                                     
gATAAAGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCcgctcgc                                                                                                                                   >  2:1239799/1‑140 (MQ=255)
gATAAAGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCcgctcgc                                                                                                                                   >  2:158684/1‑140 (MQ=255)
gATAAAGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCcgctcgc                                                                                                                                   >  1:1416195/1‑140 (MQ=255)
 atgaaGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCcgctcgcg                                                                                                                                  >  1:704631/4‑140 (MQ=255)
   aaaGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCcgctcgcgtt                                                                                                                                <  2:205581/140‑1 (MQ=255)
   aaaGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCcgctcgcgtt                                                                                                                                <  1:534451/140‑1 (MQ=255)
      gCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGa                                                                                                                             <  1:582561/140‑1 (MQ=255)
           cTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATa                                                                                                                        >  2:1468497/1‑140 (MQ=255)
             ggCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATaaa                                                                                                                      <  1:40984/140‑1 (MQ=255)
             ggCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATaaa                                                                                                                      <  2:1286931/140‑1 (MQ=255)
              gCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAAc                                                                                                                     <  1:18584/140‑1 (MQ=255)
                    gAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGTCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATaaa                                                                                                                      >  1:1299933/1‑133 (MQ=255)
                    gAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGTCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATaaa                                                                                                                      <  2:1299933/133‑1 (MQ=255)
                      aaaTCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCaa                                                                                                             <  1:133207/140‑1 (MQ=255)
                      aaaTCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCaa                                                                                                             <  1:1198900/140‑1 (MQ=255)
                      aaaTCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCaa                                                                                                             <  1:778121/140‑1 (MQ=255)
                          cAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCt                                                                                                         <  2:410628/140‑1 (MQ=255)
                           aaTGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCtt                                                                                                        <  1:256920/140‑1 (MQ=255)
                                ttGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGc                                                                                                   <  2:159552/140‑1 (MQ=255)
                                ttGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGc                                                                                                   <  2:760740/140‑1 (MQ=255)
                                ttGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGc                                                                                                   <  1:1351125/140‑1 (MQ=255)
                                   ccGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACg                                                                                                >  2:556532/1‑140 (MQ=255)
                                   ccGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACg                                                                                                >  2:319872/1‑140 (MQ=255)
                                       aaTACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCa                                                                                            <  2:3875/140‑1 (MQ=255)
                                         tACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAATGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGa                                                                                          >  2:366424/1‑140 (MQ=255)
                                             aaaCTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGAt                                                                                      <  1:1291069/140‑1 (MQ=255)
                                             aaaCTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGAt                                                                                      <  2:1331172/140‑1 (MQ=255)
                                                cTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTgg                                                                                   <  2:141182/140‑1 (MQ=255)
                                                cTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTgg                                                                                   <  2:550405/140‑1 (MQ=255)
                                                cTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTgg                                                                                   <  1:1258398/140‑1 (MQ=255)
                                                   ttGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAAt                                                                                >  2:483607/1‑140 (MQ=255)
                                                   ttGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAAt                                                                                >  2:771568/1‑140 (MQ=255)
                                                      cGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGt                                                                             <  2:1129062/140‑1 (MQ=255)
                                                       gccggggTCATTGCCAGCC‑CTGGGGCCTTCCGGGTCTTTGCCCCAGGATCCTCCCCGGTTCCGAAAGGTTCGCCCAGCCCCCGGGGTTCGAC‑ATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAg                                                                           <  2:227709/136‑1 (MQ=255)
                                                       gACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCGCCAGAATCATCTCTGGGT‑CGCACGGATCGATCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGCTa                                                                            <  2:1241244/140‑1 (MQ=255)
                                                       gACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGGCAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTa                                                                            <  2:1264361/140‑1 (MQ=255)
                                                       gACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTa                                                                            <  2:666578/140‑1 (MQ=255)
                                                        aCAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAg                                                                           <  2:280021/140‑1 (MQ=255)
                                                        aCAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAg                                                                           <  2:92056/140‑1 (MQ=255)
                                                        aCAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAg                                                                           <  1:133660/140‑1 (MQ=255)
                                                        aCAGGGCCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAg                                                                           <  2:1156975/140‑1 (MQ=255)
                                                           gggTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGAcc                                                                        >  1:888923/1‑140 (MQ=255)
                                                           gggTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGAcc                                                                        <  1:1239799/140‑1 (MQ=255)
                                                             gTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCt                                                                      <  2:285181/140‑1 (MQ=255)
                                                             gTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCt                                                                      <  2:265421/140‑1 (MQ=255)
                                                                 tttGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAAc                                                                  <  2:98990/140‑1 (MQ=255)
                                                                 tttGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAAc                                                                  >  1:1140599/1‑140 (MQ=255)
                                                                     cAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAg                                                              <  1:780536/140‑1 (MQ=255)
                                                                      aGCCACTGTGCCATACCGGTACTTTGCTCCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGc                                                             <  2:536795/140‑1 (MQ=255)
                                                                             gtgCCATCCCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCGCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCt                                                      <  2:1461169/140‑1 (MQ=255)
                                                                             gtgCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCt                                                      <  2:1416195/140‑1 (MQ=255)
                                                                             gtgCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCt                                                      <  1:556532/140‑1 (MQ=255)
                                                                                     ccGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTg                                              <  2:888923/140‑1 (MQ=255)
                                                                                      cGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGa                                             >  2:152559/1‑140 (MQ=255)
                                                                                        gTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACg                                           >  1:614412/1‑140 (MQ=255)
                                                                                        gTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACg                                           >  1:614500/1‑140 (MQ=255)
                                                                                          aCTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGAt                                         >  2:140636/1‑140 (MQ=255)
                                                                                          aCTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGAt                                         <  1:158684/140‑1 (MQ=255)
                                                                                             ttGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCg                                      >  1:884577/1‑140 (MQ=255)
                                                                                             ttGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGGAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCg                                      >  2:1188042/1‑140 (MQ=255)
                                                                                              tGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCgg                                     >  1:932689/1‑140 (MQ=255)
                                                                                                cACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGc                                   >  2:1258232/1‑140 (MQ=255)
                                                                                                 aCCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCa                                  >  1:1488406/1‑140 (MQ=255)
                                                                                                       atcatcTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAACCTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAg                            <  1:1469676/140‑1 (MQ=255)
                                                                                                        tcatcTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCCTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAgg                           <  2:153259/140‑1 (MQ=255)
                                                                                                         catcTCTGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGc                          <  1:528344/140‑1 (MQ=255)
                                                                                                            ctctGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGGCAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCggg                       <  2:1376156/140‑1 (MQ=255)
                                                                                                              ctGGTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTc                     <  2:916283/140‑1 (MQ=255)
                                                                                                                ggTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGcatcgcag                   >  2:440783/1‑133 (MQ=255)
                                                                                                                ggTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCAt                   >  1:1132753/1‑140 (MQ=255)
                                                                                                                ggTT‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCAt                   >  1:536491/1‑140 (MQ=255)
                                                                                                                  tt‑CGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCAtct                 >  2:440045/1‑140 (MQ=255)
                                                                                                                     cGAAAGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCg               <  1:319872/140‑1 (MQ=255)
                                                                                                                       aaaGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGcc             <  2:1140599/140‑1 (MQ=255)
                                                                                                                       aaaGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGcc             >  2:1254203/1‑140 (MQ=255)
                                                                                                                        aaGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCt            >  2:36793/1‑140 (MQ=255)
                                                                                                                        aaGGATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCAACTCGccc            >  2:248342/1‑139 (MQ=255)
                                                                                                                           gATCGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGCCATCCCGCCTtcc         >  2:1199153/1‑139 (MQ=255)
                                                                                                                              cGTCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTg      >  2:1000620/1‑140 (MQ=255)
                                                                                                                                tCCAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGcc    <  2:8751/140‑1 (MQ=255)
                                                                                                                                 ccAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGccc   <  2:603683/140‑1 (MQ=255)
                                                                                                                                  cAGCCGCTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGcccc  <  1:1485286/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
GATAAAGCTCGCTGGCAGCGGAAAATCAATGTTTGCCGCAATACCAAACTTTTGCGACAGGGTCATTTGCAGCCACTGTGCCATACCGGTACTTTGCACCAGAATCATCTCTGGTT‑CGAAAGGATCGTCCAGCCGTTCGCGTTCGACAATAAACTCCATCAACGCTTCCAGCACGTCCAGACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCC  >  NC_000913/2962222‑2962490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A