Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	124	90.1	3003320	99.2%	2979293	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,490,764	(C)_5→4	coding (66/564 nt)	pabA ←	aminodeoxychorismate synthase subunit 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,490,760	0	C	.	100.0%	331.9 / NA	74	coding (70/564 nt)	pabA	aminodeoxychorismate synthase subunit 2
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (33/41); total (33/41)

GCATAGTGGCGAATAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCGCCCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCTTACCACTTTGC  >  NC_000913/3490621‑3490895

gCATAGTGGCGAATAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCGc                                                                                                                                         <  2:87729/140‑1 (MQ=255)

  aTAGTGGCGAATATCGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCGccc                                                                                                                                       <  1:324319/140‑1 (MQ=255)

       ggCGAATAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTAAAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCGccccagtt                                                                                                                                  <  1:747962/140‑5 (MQ=255)

           aaTAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTcaca                                                                                                                             >  1:45355/1‑140 (MQ=255)

           aaTAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTcaca                                                                                                                             >  2:688044/1‑140 (MQ=255)

           aaTAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTcaca                                                                                                                             >  1:610862/1‑140 (MQ=255)

             tAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACaaa                                                                                                                           >  1:335949/1‑140 (MQ=255)

               aCGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAg                                                                                                                         <  1:1440524/140‑1 (MQ=255)

                cGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGt                                                                                                                        >  2:867267/1‑140 (MQ=255)

                cGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGt                                                                                                                        >  2:1425491/1‑140 (MQ=255)

                 gTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTa                                                                                                                       <  2:632468/140‑1 (MQ=255)

                   cAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACt                                                                                                                     <  2:257481/140‑1 (MQ=255)

                      gggAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGt                                                                                                                  >  1:77158/1‑140 (MQ=255)

                      gggAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGt                                                                                                                  >  2:612823/1‑140 (MQ=255)

                      gggAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGt                                                                                                                  >  1:522315/1‑140 (MQ=255)

                       ggAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTa                                                                                                                 <  1:1034264/140‑1 (MQ=255)

                           aTCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAgg                                                                                                             >  2:1109915/1‑140 (MQ=255)

                            tCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCACCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGt                                                                                                            >  1:872293/1‑140 (MQ=255)

                             cccGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGtt                                                                                                           >  2:300469/1‑140 (MQ=255)

                             cccGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGtt                                                                                                           <  1:1273830/140‑1 (MQ=255)

                              ccGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTc                                                                                                          <  2:1270923/140‑1 (MQ=255)

                              ccGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTc                                                                                                          <  1:799749/140‑1 (MQ=255)

                              ccGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTc                                                                                                          <  2:1215369/140‑1 (MQ=255)

                              ccGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTc                                                                                                          <  2:20247/140‑1 (MQ=255)

                                 gCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAg                                                                                                       >  2:15814/1‑140 (MQ=255)

                                  cTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAgg                                                                                                      <  1:13819/140‑1 (MQ=255)

                                  cTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAgg                                                                                                      <  1:183481/140‑1 (MQ=255)

                                     cATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTaa                                                                                                   <  2:458801/140‑1 (MQ=255)

                                     cATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTaa                                                                                                   <  1:1401115/140‑1 (MQ=255)

                                               aCAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACACCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTa                                                                                         >  2:613040/1‑140 (MQ=255)

                                                cAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAg                                                                                        >  2:4544/1‑140 (MQ=255)

                                                cAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAg                                                                                        >  1:208722/1‑140 (MQ=255)

                                                 aGGGGCAAGGTGAGATGAGAATTTTTTGTGGATTAAGGGCGCCGGAATCCGCCAGCGTCAGCGCTGCGTTGCGCTTAACCAGCACAACCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGATTCGTAGt                                                                                       <  2:553332/140‑1 (MQ=255)

                                                     gCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAANNNNNTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATc                                                                                   >  2:1097897/1‑140 (MQ=255)

                                                     gCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATc                                                                                   >  1:368776/1‑140 (MQ=255)

                                                     gCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATc                                                                                   >  1:201426/1‑140 (MQ=255)

                                                     gCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATc                                                                                   <  1:217670/140‑1 (MQ=255)

                                                     gCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATc                                                                                   >  1:854291/1‑140 (MQ=255)

                                                     gCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATc                                                                                   >  2:1060150/1‑140 (MQ=255)

                                                      ccAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCt                                                                                  <  1:690563/140‑1 (MQ=255)

                                                      ccAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCt                                                                                  >  1:460049/1‑140 (MQ=255)

                                                      ccAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCt                                                                                  <  2:45355/140‑1 (MQ=255)

                                                            gagaTGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGc                                                                            <  1:492655/140‑1 (MQ=255)

                                                             agaTGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCa                                                                           >  1:62549/1‑140 (MQ=255)

                                                             agaTGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCa                                                                           >  1:1243589/1‑140 (MQ=255)

                                                               aTGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAgg                                                                         >  2:633556/1‑140 (MQ=255)

                                                                tGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGa                                                                        >  1:1279958/1‑140 (MQ=255)

                                                                      ttttttGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATgg                                                                  <  1:613040/140‑1 (MQ=255)

                                                                           tgtgGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCt                                                             <  1:104302/140‑1 (MQ=255)

                                                                           tgtgGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCt                                                             <  1:117353/140‑1 (MQ=255)

                                                                            gtgGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTc                                                            <  1:694383/140‑1 (MQ=255)

                                                                            gtgGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTc                                                            <  2:522315/140‑1 (MQ=255)

                                                                            gtgGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTc                                                            <  1:1109915/140‑1 (MQ=255)

                                                                               gTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCgg                                                         <  2:335949/140‑1 (MQ=255)

                                                                                  tAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGGAc                                                      >  2:250184/1‑140 (MQ=255)

                                                                                         gTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGaa                                               >  1:824071/1‑140 (MQ=255)

                                                                                         gTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGaa                                               <  1:281768/140‑1 (MQ=255)

                                                                                            gATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACcg                                            <  1:470641/140‑1 (MQ=255)

                                                                                            gATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACcg                                            <  1:932090/140‑1 (MQ=255)

                                                                                              tatCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACcgcg                                          <  2:201426/140‑1 (MQ=255)

                                                                                              tatCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACcgcg                                          <  1:1425491/140‑1 (MQ=255)

                                                                                              tatCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACcgcg                                          <  2:460049/140‑1 (MQ=255)

                                                                                                     cAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTAtttt                                   <  1:1389524/140‑1 (MQ=255)

                                                                                                      aGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTa                                  <  1:1060150/140‑1 (MQ=255)

                                                                                                        cGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACt                                >  1:579908/1‑140 (MQ=255)

                                                                                                        cGTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACt                                >  2:1321875/1‑140 (MQ=255)

                                                                                                         gTCAACGCATCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTc                               <  1:25063/140‑1 (MQ=255)

                                                                                                                 aTCGTTGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTccc                       >  1:232127/1‑140 (MQ=255)

                                                                                                                      tGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCt                  <  2:1243589/140‑1 (MQ=255)

                                                                                                                      tGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCt                  <  1:4544/140‑1 (MQ=255)

                                                                                                                      tGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCt                  <  2:62549/140‑1 (MQ=255)

                                                                                                                      tGCGCTTAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCGCCGGTACCATAAAAACGGGCGCTTTTTCTCAGAGTCCCCGGCt                  >  2:907123/1‑140 (MQ=255)

                                                                                                                           ttAACCAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCt             <  2:826459/140‑1 (MQ=255)

                                                                                                                                cAGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCTTACCa        <  1:867267/140‑1 (MQ=255)

                                                                                                                                 aGCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCTTACCAc       <  2:872293/140‑1 (MQ=255)

                                                                                                                                  gCACATCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCTTACCACt      <  2:208722/140‑1 (MQ=255)

                                                                                                                                     caTCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCTTACCACTTTg   >  1:1309960/1‑140 (MQ=255)

                                                                                                                                      aTCCG‑CCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCTTACCACTTTGc  <  2:368776/140‑1 (MQ=255)

GCATAGTGGCGAATAACGTCAAGGGAGATCCCGGCTTCATCTGGCGTACAGGGGCCAGGTGAGATGACAATTTTTTGTGGTTTAAGGGCGTCGATATCCGCCAGCGTCAACGCATCGTTGCGCTTAACCAGCACATCCGCCCCCAGTTCACAAAAGTACTGGTAGAGGTTCCAGGTAAAAGAATCGTAGTTATCTATAAGCAGGATCATGGCGGCTCCGGTACAAAAGAACCGCGCTATTTTACTCAGATTCCCCGGCTTCGCTTACCACTTTGC  >  NC_000913/3490621‑3490895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A