Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 132 61.4 2079690 99.1% 2060972 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 642,281 A→G E65G (GAA→GGA)  ybdR → putative Zn(2(+))‑dependent alcohol dehydrogenase YbdR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913642,2810AG98.5% 247.5 / ‑3.2 68coding (194/1239 nt)ybdRputative Zn(2(+))‑dependent alcohol dehydrogenase YbdR
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (37/30);  minor base . (0/1);  total (37/31)
Fisher's exact test for biased strand distribution p-value = 4.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-01

CGGGCGTTGAACAGGCAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGAAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCAATGCGGGT  >  NC_000913/642146‑642417
                                                                                                                                       |                                                                                                                                        
cGGGCGTTGAACAGGCAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGagta                                                                                                                                      <  2:274922/140‑1 (MQ=255)
  ggCGTTGAACAGGCAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGagtagt                                                                                                                                    >  1:413477/1‑140 (MQ=255)
    ggTTGAACAGGCAGATGATATTATTCTGCGTATTCCGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAACCATGGCGATATTTTTGGTAATGAATTTATGGGGG‑AGTAGTTGa                                                                                                                                 <  2:945320/139‑1 (MQ=255)
     gTTGAACAGGCAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGa                                                                                                                                 <  1:514058/140‑1 (MQ=255)
        gAACAGGCAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAAc                                                                                                                              >  2:155609/1‑140 (MQ=255)
        gAACAGGCAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAAc                                                                                                                              >  2:44335/1‑140 (MQ=255)
               cAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAg                                                                                                                       <  2:92003/140‑1 (MQ=255)
                   tgatATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACg                                                                                                                   >  2:900134/1‑140 (MQ=255)
                            tCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAAtt                                                                                                          >  2:719960/1‑140 (MQ=255)
                            tCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAAtt                                                                                                          >  1:314401/1‑140 (MQ=255)
                              tGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTg                                                                                                        >  2:887754/1‑140 (MQ=255)
                              tGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTg                                                                                                        >  2:8259/1‑140 (MQ=255)
                                cGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCa                                                                                                      >  1:244159/1‑140 (MQ=255)
                                cGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCa                                                                                                      >  1:523564/1‑140 (MQ=255)
                                cGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCa                                                                                                      >  1:580540/1‑140 (MQ=255)
                                  tATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCaaa                                                                                                    >  1:660900/1‑140 (MQ=255)
                                          cAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGAc                                                                                            <  1:795735/140‑1 (MQ=255)
                                          cAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGAc                                                                                            <  1:525314/140‑1 (MQ=255)
                                          cAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTCTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGAc                                                                                            >  2:1029188/1‑140 (MQ=255)
                                            aCGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGTGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCg                                                                                          <  1:324407/140‑1 (MQ=255)
                                            aCGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCg                                                                                          <  2:660900/140‑1 (MQ=255)
                                            aCGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCg                                                                                          >  2:707044/1‑140 (MQ=255)
                                             cGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCTGAAAGGACGTAAAAAATTTGCAAAAAGGCTACCGa                                                                                         <  2:1006523/140‑1 (MQ=255)
                                             cGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCgg                                                                                         >  2:878319/1‑139 (MQ=255)
                                             cGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGa                                                                                         >  2:377050/1‑140 (MQ=255)
                                             cGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGa                                                                                         >  1:467429/1‑140 (MQ=255)
                                             cGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGa                                                                                         >  2:861512/1‑140 (MQ=255)
                                             cGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGa                                                                                         >  2:1029037/1‑140 (MQ=255)
                                                 gATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTgg                                                                                     <  2:865979/140‑1 (MQ=255)
                                                        ggCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTcc                                                                              <  1:60757/140‑1 (MQ=255)
                                                         gCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCg                                                                             <  1:470669/140‑1 (MQ=255)
                                                         gCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCg                                                                             <  1:155609/140‑1 (MQ=255)
                                                          ctctGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGt                                                                            >  1:153910/1‑140 (MQ=255)
                                                             tGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCg                                                                         >  2:380489/1‑140 (MQ=255)
                                                               aCCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTc                                                                       >  2:971350/1‑140 (MQ=255)
                                                                    cATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGc                                                                  >  1:615167/1‑140 (MQ=255)
                                                                           aTCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGc                                                           >  2:857131/1‑140 (MQ=255)
                                                                            tCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCg                                                          <  1:962069/140‑1 (MQ=255)
                                                                            tCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCg                                                          >  1:873310/1‑140 (MQ=255)
                                                                            tCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCg                                                          >  2:692161/1‑140 (MQ=255)
                                                                            tCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCg                                                          <  2:66483/140‑1 (MQ=255)
                                                                            tCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCg                                                          <  2:1028808/140‑1 (MQ=255)
                                                                                ggCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGGAGTTGAAACCGGAAAGGACGTAAAAAAATTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTg                                                      >  2:680601/1‑140 (MQ=255)
                                                                                 gCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGt                                                     >  1:822209/1‑140 (MQ=255)
                                                                                          cTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGt                                            >  2:157118/1‑140 (MQ=255)
                                                                                           tCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTc                                           <  2:497365/140‑1 (MQ=255)
                                                                                             aGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGa                                         <  1:817396/140‑1 (MQ=255)
                                                                                              ggTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGAt                                        <  1:420854/140‑1 (MQ=255)
                                                                                                ttAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTg                                      <  1:735544/140‑1 (MQ=255)
                                                                                                ttAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTg                                      <  1:806341/140‑1 (MQ=255)
                                                                                                ttAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTg                                      <  2:287991/140‑1 (MQ=255)
                                                                                                 tAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGc                                     >  2:593157/1‑140 (MQ=255)
                                                                                                       tGGCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAat                               >  2:698494/1‑140 (MQ=255)
                                                                                                        ggCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAata                              >  2:347572/1‑140 (MQ=255)
                                                                                                         gCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTg                                      <  2:385553/131‑1 (MQ=255)
                                                                                                         gCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTg                                      >  1:385553/1‑131 (MQ=255)
                                                                                                         gCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAatat                             >  2:527987/1‑140 (MQ=255)
                                                                                                         gCGATATTTTTGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAatat                             >  1:502030/1‑140 (MQ=255)
                                                                                                         gCGATATTTTTGGTCATGAATTTATGGGGGGAGCAGTTGAAACCGGAAAGGACGGAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAatat                             >  2:798101/1‑140 (MQ=255)
                                                                                                                  ttGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGc                    <  2:615167/140‑1 (MQ=255)
                                                                                                                  ttGGTCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAACATGCCGCCTGc                    >  2:988054/1‑140 (MQ=255)
                                                                                                                      tCATGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGaaa                <  2:189706/140‑1 (MQ=255)
                                                                                                                        aTGAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAAt              <  2:502030/140‑1 (MQ=255)
                                                                                                                          gAATTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATAc            <  2:314401/140‑1 (MQ=255)
                                                                                                                            aTTTATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCa          <  1:593157/140‑1 (MQ=255)
                                                                                                                              ttATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCAAt        <  2:467429/140‑1 (MQ=255)
                                                                                                                              ttATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCAAt        <  2:98581/140‑1 (MQ=255)
                                                                                                                               tATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCAATg       <  1:971350/140‑1 (MQ=255)
                                                                                                                               tATGGGGGGAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCAATg       >  1:1037339/1‑140 (MQ=255)
                                                                                                                                    ggggAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCAATGCGGGt  >  1:158094/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                        
CGGGCGTTGAACAGGCAGATGATATTATTCTGCGTATTACGGCAACGGCGATCTGTGGCTCTGACCTCCATCTTTATCGAGGCAAAATACCTCAGGTTAAACATGGCGATATTTTTGGTCATGAATTTATGGGGGAAGTAGTTGAAACCGGAAAGGACGTAAAAAATTTGCAAAAAGGCGACCGAGTGGTAATTCCGTTCGTCATTGCTTGTGGCGACTGTTTTTTCTGTCGATTGCAACAATATGCCGCCTGCGAAAATACCAATGCGGGT  >  NC_000913/642146‑642417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A