Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I1 R1 132 61.4 2079690 99.1% 2060972 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,817,811 Δ1 bp coding (690/1353 nt) chbF ← monoacetylchitobiose‑6‑phosphate hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,817,8080T.98.5% 285.8 / ‑2.1 67coding (693/1353 nt)chbFmonoacetylchitobiose‑6‑phosphate hydrolase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base . (30/36);  minor base A (0/1);  total (30/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCGCTGTCTTTCAGCAT  >  NC_000913/1817671‑1817942
                                                                                                                                         |                                                                                                                                      
tagtaTTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGCttt                                                                                                                                      <  2:906408/140‑1 (MQ=255)
 agtaTTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGCttta                                                                                                                                     <  2:581031/140‑2 (MQ=255)
     ttCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTg                                                                                                                                >  1:377197/1‑140 (MQ=255)
       cGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGcc                                                                                                                              >  1:725546/1‑140 (MQ=255)
        gCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGccc                                                                                                                             >  2:73803/1‑140 (MQ=255)
        gCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACG‑ATTTAACTGccc                                                                                                                             <  2:986340/140‑1 (MQ=255)
             tttCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACg                                                                                                                        >  1:806337/1‑140 (MQ=255)
                  aTAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCcaca                                                                                                                   <  1:658571/140‑1 (MQ=255)
                  aTAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCcaca                                                                                                                   <  2:330024/140‑1 (MQ=255)
                  aTAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCcaca                                                                                                                   <  2:571905/140‑1 (MQ=255)
                   tAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCacac                                                                                                                  >  2:197021/1‑140 (MQ=255)
                        aGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCa                                                                                                             >  1:994698/1‑140 (MQ=255)
                        aGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCa                                                                                                             >  2:775991/1‑140 (MQ=255)
                                     gCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCaa                                                                                                >  2:1027525/1‑140 (MQ=255)
                                       ttGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACGCCATCAAGCAATTCGGCAAAg                                                                                              <  2:1008527/140‑1 (MQ=255)
                                        tGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAgc                                                                                             >  2:1034823/1‑140 (MQ=255)
                                          aaGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAgcgc                                                                                           >  1:139821/1‑140 (MQ=255)
                                          aaGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAgcgc                                                                                           >  2:327377/1‑140 (MQ=255)
                                                   agcagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCa                                                                                  <  1:342500/140‑1 (MQ=255)
                                                    gcagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCAt                                                                                 >  2:549955/1‑140 (MQ=255)
                                                     cagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCAtt                                                                                >  1:260202/1‑140 (MQ=255)
                                                     cagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCAtt                                                                                >  1:309030/1‑140 (MQ=255)
                                                     cagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCAtt                                                                                >  1:357659/1‑140 (MQ=255)
                                                        aTAAGAACATGGCAGCAGACTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTAt                                                                             <  1:775991/140‑1 (MQ=255)
                                                         tAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATc                                                                            <  1:332338/140‑1 (MQ=255)
                                                         tAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATc                                                                            >  1:860859/1‑140 (MQ=255)
                                                          aaGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCa                                                                           >  1:788627/1‑140 (MQ=255)
                                                             aaCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                                        <  2:377197/140‑1 (MQ=255)
                                                             aaCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                                        <  2:472173/140‑1 (MQ=255)
                                                             aaCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                                        <  2:899898/140‑1 (MQ=255)
                                                             aaCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                                        <  2:512402/140‑1 (MQ=255)
                                                             aaCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                                        <  1:764691/140‑1 (MQ=255)
                                                               cATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGcaca                                                                      >  1:502690/1‑140 (MQ=255)
                                                                  ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATcc                                                                   >  2:792755/1‑140 (MQ=255)
                                                                  ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATcc                                                                   >  1:946720/1‑140 (MQ=255)
                                                                  ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATcc                                                                   >  1:192572/1‑140 (MQ=255)
                                                                  ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATcc                                                                   >  1:255294/1‑140 (MQ=255)
                                                                       cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAAt                                                              <  1:948863/140‑1 (MQ=255)
                                                                       cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAAt                                                              <  2:600393/140‑1 (MQ=255)
                                                                       cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAAt                                                              <  2:56730/140‑1 (MQ=255)
                                                                       cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAAt                                                              >  1:615810/1‑140 (MQ=255)
                                                                         gATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGa                                                            <  2:294000/140‑1 (MQ=255)
                                                                          aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                                           <  1:968487/140‑1 (MQ=255)
                                                                          aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                                           <  1:200800/140‑1 (MQ=255)
                                                                          aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                                           <  2:255294/140‑1 (MQ=255)
                                                                          aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                                           <  1:369374/140‑1 (MQ=255)
                                                                          aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                                           <  1:61887/140‑1 (MQ=255)
                                                                          aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                                           <  1:370960/140‑1 (MQ=255)
                                                                            tCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAaca                                                         <  1:1027525/140‑1 (MQ=255)
                                                                                cgaacgaaTTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACTCCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCat                                                     <  2:806337/140‑1 (MQ=255)
                                                                                 gaacgaaTTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCata                                                    <  1:446009/140‑1 (MQ=255)
                                                                                     gaaTTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGt                                                <  2:411656/140‑1 (MQ=255)
                                                                                          aaGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAgg                                           <  2:725546/140‑1 (MQ=255)
                                                                                                  aCTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACaa                                   >  1:350515/1‑140 (MQ=255)
                                                                                                       aTGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCga                              >  2:531625/1‑140 (MQ=255)
                                                                                                       aTGGCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCga                              >  1:26722/1‑140 (MQ=255)
                                                                                                          gCAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCgatag                           >  1:813012/1‑140 (MQ=255)
                                                                                                           cAGATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCgataga                          <  1:327377/140‑1 (MQ=255)
                                                                                                             gATCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCgatagata                        <  1:792755/140‑1 (MQ=255)
                                                                                                              aTCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATaa                       >  2:331216/1‑140 (MQ=255)
                                                                                                              aTCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATaa                       >  1:674997/1‑140 (MQ=255)
                                                                                                               tCGAAAATATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATaaa                      <  1:73803/140‑1 (MQ=255)
                                                                                                                    aaTATTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAatcatc                 >  1:1001211/1‑140 (MQ=255)
                                                                                                                     atatTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCg                <  2:139821/140‑1 (MQ=255)
                                                                                                                      tatTTTTTACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCGc               <  1:1034823/140‑1 (MQ=255)
                                                                                                                             tACAGAGGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCGCTGTCttt        <  2:260202/140‑1 (MQ=255)
                                                                                                                                agagGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCGCTGTCTTTCAg     <  2:788627/140‑1 (MQ=255)
                                                                                                                                agagGACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCGCTGTCTTTCAg     <  2:502690/140‑1 (MQ=255)
                                                                                                                                   ggACGC‑TTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCGCTGTCTTTCAGCAt  <  1:197021/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAAATCATCGCTGTCTTTCAGCAT  >  NC_000913/1817671‑1817942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A