Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	132	61.4	2079690	99.1%	2060972	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,755,737	C→T	noncoding (145/363 nt)	ssrA →	tmRNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,755,737	0	C	T	100.0%	216.6 / NA	63	noncoding (145/363 nt)	ssrA	tmRNA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/42); total (21/42)

GGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTCCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAG  >  NC_000913/2755605‑2755866

ggATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGcc                                                                                                                            >  1:180745/1‑140 (MQ=255)

  aTTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTc                                                                                                                          <  2:152868/140‑1 (MQ=255)

  aTTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTc                                                                                                                          <  1:108176/140‑1 (MQ=255)

  aTTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTc                                                                                                                          <  1:504362/140‑1 (MQ=255)

  aTTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTc                                                                                                                          <  2:578889/140‑1 (MQ=255)

     cGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGc                                                                                                                       >  2:454676/1‑140 (MQ=255)

     cGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGc                                                                                                                       >  2:101973/1‑140 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  2:811325/140‑1 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  2:581751/140‑1 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  1:367713/140‑1 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  1:655394/140‑1 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  2:753835/140‑1 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  1:669415/140‑1 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  2:881920/140‑1 (MQ=255)

               tGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACg                                                                                                             <  2:459097/140‑1 (MQ=255)

                    aaCCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGAt                                                                                                        <  1:711245/140‑1 (MQ=255)

                     aCCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATc                                                                                                       >  1:688604/1‑140 (MQ=255)

                               cATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTc                                                                                             <  1:476056/140‑1 (MQ=255)

                                aTGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCa                                                                                            >  1:671100/1‑140 (MQ=255)

                                 tGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCaa                                                                                           >  2:220745/1‑140 (MQ=255)

                                 tGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCaa                                                                                           >  1:894858/1‑140 (MQ=255)

                                 tGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCaa                                                                                           <  2:463582/140‑1 (MQ=255)

                                       ggggCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCaa                                                                                     >  2:483210/1‑140 (MQ=255)

                                           cGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAaga                                                                                 >  2:226899/1‑140 (MQ=255)

                                           cGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAaga                                                                                 >  2:209286/1‑140 (MQ=255)

                                            ggTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAagag                                                                                >  1:1016725/1‑140 (MQ=255)

                                            ggTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAagag                                                                                <  2:180745/140‑1 (MQ=255)

                                                ggCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATcg                                                                            <  1:367438/140‑1 (MQ=255)

                                                    tCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTg                                                                        <  2:1018963/140‑1 (MQ=255)

                                                        aaaaaGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAg                                                                    >  1:303872/1‑140 (MQ=255)

                                                          aaaGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAGCCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGcc                                                                  <  2:252441/140‑1 (MQ=255)

                                                          aaaGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGcc                                                                  <  1:691019/140‑1 (MQ=255)

                                                          aaaGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGcc                                                                  <  1:780669/140‑1 (MQ=255)

                                                          aaaGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGcc                                                                  <  1:319046/140‑1 (MQ=255)

                                                               cGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgcc                                                             <  2:739352/140‑1 (MQ=255)

                                                               cGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgcc                                                             <  2:134945/140‑1 (MQ=255)

                                                               cGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgcc                                                             <  1:852864/140‑1 (MQ=255)

                                                                 cAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCcctgcctg                                                           >  1:787849/1‑140 (MQ=255)

                                                                       aTAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTg                                                     <  2:303872/140‑1 (MQ=255)

                                                                        tAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGa                                                    <  1:944691/140‑1 (MQ=255)

                                                                        tAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGa                                                    <  1:196126/140‑1 (MQ=255)

                                                                        tAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGa                                                    <  1:208939/140‑1 (MQ=255)

                                                                              cAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGtt                                              <  2:219397/140‑1 (MQ=255)

                                                                               aaaCGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTa                                             <  1:418719/140‑1 (MQ=255)

                                                                               aaaCGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTa                                             <  2:801721/140‑1 (MQ=255)

                                                                                    acgaAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACt                                        >  1:141726/1‑140 (MQ=255)

                                                                                        aaaCTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAAt                                    <  1:487591/140‑1 (MQ=255)

                                                                                           cTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAg                                 >  2:983500/1‑140 (MQ=255)

                                                                                            tACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAgg                                <  2:1016725/140‑1 (MQ=255)

                                                                                            tACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAgg                                <  2:688604/140‑1 (MQ=255)

                                                                                             aCGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGc                               <  1:101973/140‑1 (MQ=255)

                                                                                             aCGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGc                               >  2:121118/1‑140 (MQ=255)

                                                                                             aCGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGc                               <  1:454676/140‑1 (MQ=255)

                                                                                             aCGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGc                               <  1:389478/140‑1 (MQ=255)

                                                                                             aCGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGc                               <  1:333866/140‑1 (MQ=255)

                                                                                             aCGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGCAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGc                               >  1:590068/1‑140 (MQ=255)

                                                                                              cGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCt                              <  1:220745/140‑1 (MQ=255)

                                                                                                          ttAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTg                  <  1:796979/140‑1 (MQ=255)

                                                                                                          ttAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTg                  >  1:300079/1‑140 (MQ=255)

                                                                                                          ttAATAACCTGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTg                  <  2:894858/140‑1 (MQ=255)

                                                                                                                   tGCTTAGAGCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTgtccg         >  1:792267/1‑140 (MQ=255)

                                                                                                                         gagCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTCAGTGGCGTGTCCGTCCGCa   <  1:803616/140‑1 (MQ=255)

                                                                                                                          agCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAg  >  1:18713/1‑140 (MQ=255)

                                                                                                                          agCCCTCTCTTCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAg  >  1:1023316/1‑140 (MQ=255)

GGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCTTAGAGCCCTCTCTCCCTAGCCTCCGCTCTTAGGACGGGGATCAAGAGAGGTCAAACCCAAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAG  >  NC_000913/2755605‑2755866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A