Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
132 |
61.4 |
2079690 |
99.1% |
2060972 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,811,367 |
T→C |
intergenic (+67/‑60) |
mprA → / → emrA |
DNA‑binding transcriptional repressor MprA/multidrug efflux pump membrane fusion protein EmrA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,811,367 | 0 | T | C | 100.0%
| 218.4
/ NA
| 59 | intergenic (+67/‑60) | mprA/emrA | DNA‑binding transcriptional repressor MprA/multidrug efflux pump membrane fusion protein EmrA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (24/35); total (24/35) |
GCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGCTCCTCCT > NC_000913/2811243‑2811503
|
gCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAg < 1:1015709/140‑1 (MQ=255)
gCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAg < 2:857594/140‑1 (MQ=255)
ccGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTc > 1:718148/1‑140 (MQ=255)
gACCAGATGGAACAAGACGGTGTGGTTCTGGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAg < 2:800751/140‑1 (MQ=255)
aCCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGc > 1:620133/1‑140 (MQ=255)
aCCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGc > 1:894043/1‑140 (MQ=255)
aCCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGc > 1:829722/1‑140 (MQ=255)
gATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGAt < 1:652907/140‑1 (MQ=255)
aTGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATg > 1:323412/1‑140 (MQ=255)
aTGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATg < 1:504984/140‑1 (MQ=255)
cAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTaa < 1:371329/140‑1 (MQ=255)
cAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTaa < 2:551330/140‑1 (MQ=255)
aCGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTaagaag > 2:44654/1‑140 (MQ=255)
aCGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTaagaag > 1:238419/1‑140 (MQ=255)
cGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAagaaga < 2:56810/140‑1 (MQ=255)
tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCg > 2:152310/1‑140 (MQ=255)
tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCg > 2:860241/1‑140 (MQ=255)
tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCg > 2:264329/1‑140 (MQ=255)
tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCg > 2:404087/1‑140 (MQ=255)
tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCg > 1:177966/1‑140 (MQ=255)
tgtgGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCg > 1:114276/1‑140 (MQ=255)
ggTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTgg < 2:477491/140‑1 (MQ=255)
ttCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGgag < 2:1024531/140‑1 (MQ=255)
ctcGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTATGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGaa < 2:934712/140‑1 (MQ=255)
tcGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAAc < 2:448335/140‑1 (MQ=255)
gAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCTGATGAGTTAAGAAGATCGTGGAGAACaa > 1:973246/1‑140 (MQ=255)
aTGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAg < 1:744090/140‑1 (MQ=255)
gAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAgcg < 1:626948/140‑1 (MQ=255)
gTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGga < 2:323412/140‑1 (MQ=255)
tCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGgag > 2:247023/1‑140 (MQ=255)
tcGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCa < 2:797166/140‑1 (MQ=255)
tCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAAcc > 2:234976/1‑140 (MQ=255)
aaTCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCgca < 2:305577/140‑1 (MQ=255)
ccAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCTGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCgcagca < 2:973246/140‑1 (MQ=255)
ccAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCgcagca < 2:718148/140‑1 (MQ=255)
ccAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCgcagca < 1:404087/140‑1 (MQ=255)
ccAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCgcagca < 2:944669/140‑1 (MQ=255)
aGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAAc < 1:10048/140‑1 (MQ=255)
aGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAAc < 1:215358/140‑1 (MQ=255)
aGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAAc < 2:416974/140‑1 (MQ=255)
taAAAGAAAAAATGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTaaa > 1:963001/1‑140 (MQ=255)
aaaaaTGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGc > 1:737104/1‑140 (MQ=255)
aaaaTGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCg < 1:177257/140‑1 (MQ=255)
aaTGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGc > 1:1030180/1‑140 (MQ=255)
aTGACTGGCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCa < 2:801127/140‑1 (MQ=255)
gCCAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTaa > 2:915998/1‑140 (MQ=255)
cAGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGc > 2:298967/1‑140 (MQ=255)
aGCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCg < 2:829722/140‑1 (MQ=255)
gCATCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGt < 2:540030/140‑1 (MQ=255)
aTCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCt < 2:703919/140‑1 (MQ=255)
tCGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTg < 1:44654/140‑1 (MQ=255)
cGCAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGc < 2:115058/140‑1 (MQ=255)
cAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTc < 2:1010494/135‑1 (MQ=255)
cAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTc > 1:1010494/1‑135 (MQ=255)
cAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGctc < 1:845200/140‑1 (MQ=255)
cAACATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGctc > 1:810596/1‑140 (MQ=255)
aaCATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGctcc < 2:177966/140‑1 (MQ=255)
aaCATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGctcc < 2:114276/140‑1 (MQ=255)
aCATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGctcct < 2:238409/140‑1 (MQ=255)
aCATGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGctcct < 2:126878/140‑1 (MQ=255)
tGCCGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGCTcctcct > 1:6757/1‑140 (MQ=255)
|
GCTCTCCCGTCTCGACCAGATGGAACAAGACGGTGTGGTTCTCGAAGCGATGAGCTAACGCGTCATCTCGCTCAAAAATCCAGATTTATAAAAGAAAAAATGACTGGCCAGCATCGCAACATGCTGGCCTTTTTGGCAAGCAGGTCGGCTCAGCCGATGAGTTAAGAAGATCGTGGAGAACAATATGAGCGCAAATGCGGAGACTCAAACCCCGCAGCAACCGGTAAAGAAGAGCGGCAAACGTAAGCGTCTGCTCCTCCT > NC_000913/2811243‑2811503
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
