Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	132	61.4	2079690	99.1%	2060972	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,838,784	A→G	C161R (TGC→CGC)	ascG ←	DNA‑binding transcriptional repressor AscG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,838,784	0	A	G	100.0%	249.1 / NA	66	C161R (TGC→CGC)	ascG	DNA‑binding transcriptional repressor AscG
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (41/25); total (41/25)

CGCCAGCGCGTCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCACCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGC  >  NC_000913/2838647‑2838917

cgcCAGCGCGTCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGcc                                                                                                                                     >  2:678669/1‑140 (MQ=255)

cgcCAGCGCGTCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGcc                                                                                                                                     >  2:341268/1‑140 (MQ=255)

cgcCAGCGCGTCTTTATACCCGCCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGcc                                                                                                                                     >  2:825385/1‑140 (MQ=255)

  ccAGCGCGTCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAg                                                                                                                                   >  1:816927/1‑140 (MQ=255)

      cgcgTCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGc                                                                                                                               >  1:355234/1‑140 (MQ=255)

      cgcgTCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGc                                                                                                                               >  1:94934/1‑140 (MQ=255)

          tCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATg                                                                                                                           >  2:772161/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCGACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  2:39677/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  1:154892/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  2:988925/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  1:957098/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  1:841359/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  1:806831/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  1:768245/1‑140 (MQ=255)

                     ggCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGtttt                                                                                                                >  1:224512/1‑140 (MQ=255)

                          gACGTTCAATGCTGGTGGGGGAATCCATCGACCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTgcgc                                                                                                           >  1:649008/1‑140 (MQ=255)

                             gTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAgg                                                                                                        >  1:152013/1‑140 (MQ=255)

                                cgaTGCCGGTGGGGGAATCATTAGAGCCGGTAATGAAAGCAATCTCTTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAggcgg                                                                                                     <  2:1022838/138‑1 (MQ=255)

                                      tggtggGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTa                                                                                               >  2:922975/1‑140 (MQ=255)

                                          gggggAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCa                                                                                           <  2:233782/140‑1 (MQ=255)

                                          gggggAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCa                                                                                           <  1:678669/140‑1 (MQ=255)

                                           ggggAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCAc                                                                                          >  1:895806/1‑140 (MQ=255)

                                             ggAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCa                                                                                        >  1:584335/1‑140 (MQ=255)

                                             ggAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCa                                                                                        >  2:773017/1‑140 (MQ=255)

                                              gAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGTCACGGCGTTGAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGAGATTAAGCACCAt                                                                                       <  2:317255/140‑1 (MQ=255)

                                              gAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCAt                                                                                       <  1:440034/140‑1 (MQ=255)

                                               aaTCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCAtt                                                                                      >  2:964074/1‑140 (MQ=255)

                                               aaTCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCAtt                                                                                      >  2:1031546/1‑140 (MQ=255)

                                                   cATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCg                                                                                  >  1:269629/1‑140 (MQ=255)

                                                          ccGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACt                                                                           >  1:651741/1‑140 (MQ=255)

                                                           cGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACtg                                                                          <  2:232176/140‑1 (MQ=255)

                                                            ggTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACtgt                                                                         >  1:207486/1‑140 (MQ=255)

                                                              tAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGa                                                                             <  2:887555/134‑1 (MQ=255)

                                                              tAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGa                                                                             >  1:887555/1‑134 (MQ=255)

                                                                       cAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTGTGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAatg                                                              <  2:649008/140‑1 (MQ=255)

                                                                       cAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAatg                                                              <  2:841359/140‑1 (MQ=255)

                                                                          tctcCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGGGCGCGTCAatgatg                                                           >  2:365393/1‑140 (MQ=255)

                                                                             ccTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCa                                                        <  2:269629/140‑1 (MQ=255)

                                                                                gATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCg                                                     >  2:48448/1‑140 (MQ=255)

                                                                                 aTGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGa                                                    >  2:57067/1‑140 (MQ=255)

                                                                                    cccGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACCGTGCGCGTCAATGATGTCATCGAtct                                                 >  1:542659/1‑140 (MQ=255)

                                                                                        gCGTTTATCATCTCTGCAGCGGCGTTAAAACTGGGCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGTAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATc                                             <  2:278122/140‑1 (MQ=255)

                                                                                        gCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATc                                             <  2:207486/140‑1 (MQ=255)

                                                                                        gCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATc                                             <  2:768245/140‑1 (MQ=255)

                                                                                        gCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATc                                             <  2:977967/140‑1 (MQ=255)

                                                                                        gCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATc                                             >  2:411898/1‑140 (MQ=255)

                                                                                          gTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCa                                           <  1:773017/140‑1 (MQ=255)

                                                                                           tttATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCAc                                          >  1:712298/1‑140 (MQ=255)

                                                                                            ttATCAACACTGCCGCGGCGTTAAAACTTGTTTGTTTATGATCGCGCCAGACTCTATGGCTGCTGTTTTTGCGCATTCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACg                                         <  2:340796/140‑1 (MQ=255)

                                                                                                   ctctACCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTaaaa                                  >  2:797295/1‑140 (MQ=255)

                                                                                                     ctGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTaaaaaa                                >  2:892115/1‑140 (MQ=255)

                                                                                                      tGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACTATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAc                               >  1:688429/1‑140 (MQ=255)

                                                                                                      tGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAc                               >  1:736310/1‑140 (MQ=255)

                                                                                                      tGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAc                               >  2:232480/1‑140 (MQ=255)

                                                                                                      tGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAc                               >  2:192394/1‑140 (MQ=255)

                                                                                                       gCCACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAcg                              <  1:962463/140‑1 (MQ=255)

                                                                                                        ccACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAcgc                             >  2:1008034/1‑140 (MQ=255)

                                                                                                        ccACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAcgc                             >  2:919941/1‑140 (MQ=255)

                                                                                                         cACGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAAcgcg                            <  1:184140/140‑1 (MQ=255)

                                                                                                           cGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCggg                          <  2:224512/140‑1 (MQ=255)

                                                                                                           cGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCggg                          <  2:152013/140‑1 (MQ=255)

                                                                                                           cGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCggg                          <  2:468614/140‑1 (MQ=255)

                                                                                                           cGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCggg                          <  2:66795/140‑1 (MQ=255)

                                                                                                           cGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCggg                          <  2:651741/140‑1 (MQ=255)

                                                                                                           cGGCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCggg                          <  2:584335/140‑1 (MQ=255)

                                                                                                            ggCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGt                         <  1:621996/140‑1 (MQ=255)

                                                                                                             gCGTTAAAACTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTa                        >  2:805739/1‑140 (MQ=255)

                                                                                                                   aaaCTGGTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGACCGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCAt                  <  1:988925/140‑1 (MQ=255)

                                                                                                                        ggTCTGTTTATGATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATcg             >  1:329125/1‑140 (MQ=255)

                                                                                                                                tattatCCCGCCAGACGCTATGGCTGCTGTTTATGCGCAGGCGGCGATTAAGCGCCATTATCGGCTGACTGTGCGCATCAATGATGTCATCGATCTCATCCGCGCTTAAAAAACGCGGGTAAATCATGATCGCGTcgcag     <  2:576433/140‑1 (MQ=255)

                                                                                                                                   gATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTcgcagcgc  <  1:825385/140‑1 (MQ=255)

                                                                                                                                   gATCGCGCCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACCGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTcgcagcgc  <  2:542659/140‑1 (MQ=255)

CGCCAGCGCGTCTTTATACCCGGCAAGACGTTCAATGCTGGTGGGGGAATCCATCGAGCCGGTAAGGAAAGCAATCTCCTGATGCCCGGCGTTTATCAACTCTGCCACGGCGTTAAAACTGGTCTGTTTATGATCGCACCAGACGCTATGGCTGCTGTTTTTGCGCAGGCGGCGATTAAGCACCATTATCGGCTGACTGTGCGCGTCAATGATGTCATCGATCTCATCCACGCTTAAAAAACGCGGGTAAATCATGATCGCGTCGCAGCGC  >  NC_000913/2838647‑2838917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A