Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	132	61.4	2079690	99.1%	2060972	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,624,042	(G)_6→7	intergenic (+260/‑336)	yhhH → / → yhhI	PF15631 family protein YhhH/putative transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,624,036	1	.	G	98.5%	243.1 / ‑3.4	67	intergenic (+254/‑342)	yhhH/yhhI	PF15631 family protein YhhH/putative transposase
Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (37/29); total (37/30)
Fisher's exact test for biased strand distribution p-value = 4.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

CATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑GGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTT  >  NC_000913/3623897‑3624170

catacCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAaga                                                                                                                                          <  1:547014/140‑1 (MQ=34)

  tacCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑gg                                                                                                                                       <  1:1009256/140‑1 (MQ=34)

   acCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑ggg                                                                                                                                      >  1:939253/1‑140 (MQ=37)

       gaaaagaaaGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑ggg‑gggg                                                                                                                                 >  1:443344/1‑139 (MQ=38)

        aaaagaaaGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑ggg‑ggggc                                                                                                                                >  2:17306/1‑138 (MQ=38)

         aaagaaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑ggg‑ggggca                                                                                                                               <  2:1003210/140‑4 (MQ=38)

           agaaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑ggg‑ggggcaag                                                                                                                             <  2:143638/140‑6 (MQ=255)

           agaaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑ggg‑ggggcaag                                                                                                                             >  2:354431/1‑135 (MQ=255)

             aaagGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGAc                                                                                                                            >  1:547562/1‑140 (MQ=255)

                        aaGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGAtt                                                                                                                 <  2:80083/140‑1 (MQ=255)

                               tGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAGGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAAtt                                                                                                          <  1:455232/140‑1 (MQ=255)

                               tGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAAtt                                                                                                          <  2:587573/140‑1 (MQ=255)

                               tGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAAtt                                                                                                          <  2:278426/140‑1 (MQ=255)

                               tGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAAtt                                                                                                          >  2:431722/1‑140 (MQ=255)

                               tGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAAtt                                                                                                          <  2:352225/140‑1 (MQ=255)

                                ggTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTg                                                                                                         >  1:709129/1‑140 (MQ=255)

                                ggTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTg                                                                                                         >  1:350548/1‑140 (MQ=255)

                                  tttACATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGaa                                                                                                       >  2:419788/1‑140 (MQ=255)

                                     atataATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTc                                                                                                    >  2:405019/1‑140 (MQ=255)

                                     atataATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTc                                                                                                    >  1:709595/1‑140 (MQ=255)

                                       ataataAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTg                                                                                                  >  1:67918/1‑140 (MQ=255)

                                          ataaATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCAc                                                                                               <  2:545056/140‑1 (MQ=255)

                                           taaATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACt                                                                                              >  2:336016/1‑140 (MQ=255)

                                           taaATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACt                                                                                              >  1:126888/1‑140 (MQ=255)

                                           taaATGTAAGAAACTAAATGATGATGAAGTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGGATTACAGTTAAGAGGGG‑GGGCAAGACGATGTTAGATTGGCAATTGTATTCTGCACt                                                                                              >  2:109208/1‑140 (MQ=14)

                                              aTGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGAc                                                                                           >  1:482980/1‑140 (MQ=255)

                                              aTGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGAc                                                                                           >  2:896935/1‑140 (MQ=255)

                                              aTGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGAc                                                                                           >  2:621690/1‑140 (MQ=255)

                                               cgTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACa                                                                                          <  2:868383/139‑1 (MQ=255)

                                                gTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACaa                                                                                         >  2:666980/1‑140 (MQ=255)

                                                gTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑GGGTGGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACaa                                                                                         <  1:1010901/140‑1 (MQ=255)

                                                      aaCTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATta                                                                                   <  1:606868/140‑1 (MQ=255)

                                                         tAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTatat                                                                                >  2:966188/1‑140 (MQ=255)

                                                           aaTGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATcc                                                                              >  1:556112/1‑140 (MQ=255)

                                                              gatgatgaATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTa                                                                           <  2:441343/140‑1 (MQ=255)

                                                               atgatgaATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATtat                                                                                  >  1:1021743/1‑132 (MQ=255)

                                                               atgatgaATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATtat                                                                                  <  2:1021743/132‑1 (MQ=255)

                                                               atgatgaATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTag                                                                          <  2:717313/140‑1 (MQ=255)

                                                                   tgaATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGat                                                                      >  1:182827/1‑140 (MQ=255)

                                                                        tattTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCgg                                                                 <  1:354431/140‑1 (MQ=255)

                                                                        tattTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCgg                                                                 <  1:529546/140‑1 (MQ=255)

                                                                         attTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGa                                                                <  2:215154/140‑1 (MQ=255)

                                                                         attTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGa                                                                <  2:925769/140‑1 (MQ=255)

                                                                         attTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGa                                                                <  1:986330/140‑1 (MQ=255)

                                                                         attTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGa                                                                <  2:798423/140‑1 (MQ=255)

                                                                          tttCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAg                                                               <  1:230961/140‑1 (MQ=255)

                                                                          tttCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAg                                                               <  2:1007591/140‑1 (MQ=255)

                                                                            tCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCa                                                             >  1:608276/1‑140 (MQ=255)

                                                                               cTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCAttt                                                          >  2:260646/1‑140 (MQ=255)

                                                                               cTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCAttt                                                          >  2:518972/1‑140 (MQ=255)

                                                                               cTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCAttt                                                          >  1:702006/1‑140 (MQ=255)

                                                                                    ttGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACt                                                     >  2:639812/1‑140 (MQ=255)

                                                                                       atgatCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCgg                                                  <  1:322837/140‑1 (MQ=255)

                                                                                       atgatCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCgg                                                  >  2:843588/1‑140 (MQ=255)

                                                                                        tgatCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCggg                                                 >  1:212854/1‑140 (MQ=255)

                                                                                         gatCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGc                                                <  2:547562/140‑1 (MQ=255)

                                                                                            cGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCaaa                                             >  2:826677/1‑140 (MQ=255)

                                                                                            cGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCaaa                                             >  2:360942/1‑140 (MQ=255)

                                                                                            cGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCaaa                                             >  1:568720/1‑140 (MQ=255)

                                                                                            cGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCaaa                                             >  1:551156/1‑140 (MQ=255)

                                                                                            cGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCaaa                                             >  2:180246/1‑140 (MQ=255)

                                                                                              cAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAata                                           >  1:350964/1‑140 (MQ=255)

                                                                                                 ttCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATaa                                        >  1:873185/1‑140 (MQ=255)

                                                                                                      tGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTg                                   >  2:256713/1‑140 (MQ=255)

                                                                                                               tttCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATg                          >  2:546105/1‑140 (MQ=255)

                                                                                                               tttCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATg                          <  2:709595/140‑1 (MQ=255)

                                                                                                                ttCATCTGCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGc                         <  1:896935/140‑1 (MQ=255)

                                                                                                                       gCCAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATa                  <  1:26960/140‑1 (MQ=255)

                                                                                                                        ccAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATaa                 <  1:17306/140‑1 (MQ=255)

                                                                                                                        ccAGAGTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATaa                 <  1:721658/140‑1 (MQ=255)

                                                                                                                           gagTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGt              <  1:843588/140‑1 (MQ=255)

                                                                                                                            agTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGtt             >  1:277100/1‑140 (MQ=255)

                                                                                                                            agTATTACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGtt             >  1:829592/1‑140 (MQ=255)

                                                                                                                                ttACAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGTTTTTa         <  2:702006/140‑1 (MQ=255)

                                                                                                                                   cAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGTTTTTAata      >  1:876283/1‑140 (MQ=255)

                                                                                                                                   cAGTTAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGTTTTTAata      <  2:920057/140‑1 (MQ=255)

                                                                                                                                       tAAGAGGGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATAtttt  <  1:260646/140‑1 (MQ=255)

CATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAATTATTTCGCTTACTTGATGATCGCAATTCCTTGAAAAGGATTTCATCTGCCAGAGTATTACAGTTAAGA‑GGG‑GGGCAAGACGCTGTTAGATTGGCAATTGAATTCTGCACTGACAAAAATTATATCCGTAGAGATATCGGAGCATTTATACTCGGGCAAATATAAATTTGCAAAAAATGCGAAGATAATGTTTTTAATATTTT  >  NC_000913/3623897‑3624170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A