Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 97.0 3206026 99.3% 3183583 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 676,304 T→C N82D (AAT→GAT)  ybeQ ← Sel1 repeat‑containing protein YbeQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913676,3040TC98.8% 326.3 / ‑4.4 86N82D (AAT→GAT) ybeQSel1 repeat‑containing protein YbeQ
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (46/39);  total (47/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.05e-01

CGCGGCTATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGC  >  NC_000913/676167‑676438
                                                                                                                                         |                                                                                                                                      
cgcgGCTATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTcatcat                                                                                                                                      >  1:251032/1‑140 (MQ=255)
      tATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTAt                                                                                                                                <  2:923066/140‑1 (MQ=255)
       aTCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATg                                                                                                                               <  1:586294/140‑1 (MQ=255)
        tCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGa                                                                                                                              >  2:738660/1‑140 (MQ=255)
             tACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCt                                                                                                                         >  2:350404/1‑140 (MQ=255)
                  gACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTAt                                                                                                                    >  2:1279813/1‑140 (MQ=255)
                  gACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTAt                                                                                                                    >  2:210649/1‑140 (MQ=255)
                  gACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTAt                                                                                                                    <  1:28261/140‑1 (MQ=255)
                  gACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTAt                                                                                                                    >  2:677109/1‑140 (MQ=255)
                   aCAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATc                                                                                                                   <  2:1251476/140‑1 (MQ=255)
                   aCAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATc                                                                                                                   <  1:1419734/140‑1 (MQ=255)
                   aCAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATc                                                                                                                   <  1:1246939/140‑1 (MQ=255)
                   aCAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGACAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATc                                                                                                                   <  2:1381257/140‑1 (MQ=255)
                     aaCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCt                                                                                                                 <  1:166862/140‑1 (MQ=255)
                     aaCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCt                                                                                                                 <  1:1113850/140‑1 (MQ=255)
                     aaCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCt                                                                                                                 <  1:486729/140‑1 (MQ=255)
                     aaCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCt                                                                                                                 <  2:1399264/140‑1 (MQ=255)
                     aaCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCt                                                                                                                 <  2:896114/140‑1 (MQ=255)
                     aaCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGACGGCTTGCTCATCATCTTTATGACGGCTTTTATCCt                                                                                                                 <  2:1581626/140‑1 (MQ=255)
                      aCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTc                                                                                                                >  2:213211/1‑140 (MQ=255)
                      aCCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTc                                                                                                                >  1:799408/1‑140 (MQ=255)
                       ccGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCg                                                                                                               <  2:66713/140‑1 (MQ=255)
                          cttcttTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGta                                                                                                            <  2:682070/140‑1 (MQ=255)
                          cttcttTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGta                                                                                                            <  2:1456541/140‑1 (MQ=255)
                            tcttTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGtata                                                                                                          >  1:792384/1‑140 (MQ=255)
                               ttATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACtt                                                                                                       <  1:1300595/140‑1 (MQ=255)
                                 ataATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACtttt                                                                                                     <  2:760291/140‑1 (MQ=255)
                                  taATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTg                                                                                                    <  1:446161/140‑1 (MQ=255)
                                    aTTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGcc                                                                                                  <  2:907745/140‑1 (MQ=255)
                                    aTTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGcc                                                                                                  <  1:1489214/140‑1 (MQ=255)
                                    aTTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGcc                                                                                                  <  2:1382936/140‑1 (MQ=255)
                                    aTTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGcc                                                                                                  <  1:738660/140‑1 (MQ=255)
                                     ttGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGccc                                                                                                 >  2:794530/1‑140 (MQ=255)
                                     ttGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCACGGTATACTTTTGccc                                                                                                 >  2:610721/1‑140 (MQ=255)
                                      tGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCt                                                                                                <  1:1140472/140‑1 (MQ=255)
                                      tGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCt                                                                                                <  2:374987/140‑1 (MQ=255)
                                          ggCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAgg                                                                                            >  2:275108/1‑140 (MQ=255)
                                              tctcCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATa                                                                                        <  1:445342/140‑1 (MQ=255)
                                                 ccACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACtg                                                                                     <  1:511328/140‑1 (MQ=255)
                                                     gATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCt                                                                                 <  1:363114/140‑1 (MQ=255)
                                                         cAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTcac                                                                             >  2:575776/1‑140 (MQ=255)
                                                          aGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTcaca                                                                            >  1:1399171/1‑140 (MQ=255)
                                                          aGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTcaca                                                                            >  1:1582191/1‑140 (MQ=255)
                                                           gtgtCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACaa                                                                           <  2:330424/140‑1 (MQ=255)
                                                            tgtCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAAt                                                                          >  1:371863/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAGTGACCt                                                                     >  2:1159873/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  2:756320/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  2:931024/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:985399/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:1393848/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:1405093/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:1570030/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:269157/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:394780/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:820448/1‑140 (MQ=255)
                                                                 aGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCt                                                                     >  1:965824/1‑140 (MQ=255)
                                                                   ccAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTg                                                                   >  1:1122185/1‑140 (MQ=255)
                                                                   ccAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTg                                                                   >  1:739942/1‑140 (MQ=255)
                                                                      aGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTc                                                                >  1:1574592/1‑140 (MQ=255)
                                                                       gggCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCa                                                               >  1:1182308/1‑140 (MQ=255)
                                                                        ggCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAg                                                              >  1:1121384/1‑140 (MQ=255)
                                                                        ggCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAg                                                              >  2:16458/1‑140 (MQ=255)
                                                                        ggCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAg                                                              >  2:713163/1‑140 (MQ=255)
                                                                            ttGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGc                                                          <  1:649079/140‑1 (MQ=255)
                                                                            ttGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGc                                                          <  2:792384/140‑1 (MQ=255)
                                                                                  gCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCtt                                                    <  1:1015046/140‑1 (MQ=255)
                                                                                  gCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCtt                                                    <  1:1159873/140‑1 (MQ=255)
                                                                                   cGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTc                                                   >  2:913821/1‑140 (MQ=255)
                                                                                            ggCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTaa                                          >  1:1125173/1‑140 (MQ=255)
                                                                                                  gTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCt                                    >  2:651580/1‑140 (MQ=255)
                                                                                                  gTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTAGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCt                                    >  2:1059541/1‑140 (MQ=255)
                                                                                                  gTAGGACAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCt                                    >  2:755903/1‑140 (MQ=255)
                                                                                                       gCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtc                               >  1:819060/1‑140 (MQ=255)
                                                                                                        cAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtcg                              <  1:1562778/140‑1 (MQ=255)
                                                                                                        cAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtcg                              <  2:1182308/140‑1 (MQ=255)
                                                                                                        cAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtcg                              >  2:881086/1‑140 (MQ=255)
                                                                                                        cAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtcg                              >  1:1242915/1‑140 (MQ=255)
                                                                                                          gCTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtcgtc                            >  1:438413/1‑140 (MQ=255)
                                                                                                           cTTTTTTCAGCCAGAAGATGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTtcgtcg                           <  1:931024/140‑1 (MQ=255)
                                                                                                              ttttCAGCCAGAAGATGGCTTACTCAACATCTTTATGACGGCTTTTATCCTCGATATGCTATTGCTCTAAGGAAGACTGTGCTTCACAATGACCTTGCTCAGCGGACAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTcc                        <  2:1542940/140‑1 (MQ=255)
                                                                                                                         aagaTGGCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAAt             >  1:650885/1‑140 (MQ=255)
                                                                                                                               gCTTGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCt       >  2:1515261/1‑140 (MQ=255)
                                                                                                                                  tGCTCATCATCTTTATGTCGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATc    <  1:913821/140‑1 (MQ=255)
                                                                                                                                  tGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATc    >  2:150783/1‑140 (MQ=255)
                                                                                                                                  tGCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCATAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATc    <  1:1279813/140‑1 (MQ=255)
                                                                                                                                   gCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATcg   >  1:488606/1‑140 (MQ=255)
                                                                                                                                   gCTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATcg   >  2:1456586/1‑140 (MQ=255)
                                                                                                                                    cTCATCATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATcgc  <  1:881086/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
CGCGGCTATCTGATACCAGACAACCGCTTCTTTATAATTGGGGGCTTCTCCACGATCCAGTGTCCAGCCAAGGGCGTTGGAAGCGAAAGTATGGCCTTGTAGGGCAGCTTTTTTCAGCCAGAAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGC  >  NC_000913/676167‑676438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A