Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	120	97.0	3206026	99.3%	3183583	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,263,632	(G)_5→6	intergenic (‑132/‑82)	lolB ← / → hemA	outer membrane lipoprotein LolB/glutamyl‑tRNA reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,263,627	1	.	G	100.0%	334.4 / NA	87	intergenic (‑127/‑87)	lolB/hemA	outer membrane lipoprotein LolB/glutamyl‑tRNA reductase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (32/55); total (32/55)

GCAGGGGCATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑GGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAT  >  NC_000913/1263491‑1263759

gCAGGGGCATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑ggg                                                                                                                                   <  1:247543/140‑1 (MQ=255)

  aGGGGCATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAGCGGCTTTCGGCAATTACTCCAAAA‑ggggg                                                                                                                                 <  1:533257/140‑1 (MQ=255)

  aGGGGCATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑ggggg                                                                                                                                 <  1:430353/140‑1 (MQ=255)

   ggggCATAGTGATGACAAGTCCTTGAGATTCGTTGCAGTTAAAACCCCTAATGGTAGCCGTTCCCTCCGCTATCGGCTATGTTCAAGGTGGCTTAATTTCCAGAATCCAACGGGTTTCGGCAATTACTCCAAAA‑gggggg                                                                                                                                <  2:682494/140‑2 (MQ=255)

     ggCATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATACCCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑ggggggcg                                                                                                                              <  1:510259/140‑4 (MQ=255)

     ggCATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑ggggggcg                                                                                                                              <  1:953920/140‑4 (MQ=255)

       cATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑ggggggcgct                                                                                                                            <  1:1120581/140‑6 (MQ=255)

       cATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑ggggggcgct                                                                                                                            <  1:1232844/140‑6 (MQ=255)

         tAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGctct                                                                                                                           >  2:1242753/1‑140 (MQ=255)

         tAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGctct                                                                                                                           <  1:136274/140‑1 (MQ=255)

          aGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGctctc                                                                                                                          >  2:1497040/1‑140 (MQ=255)

          aGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGctctc                                                                                                                          <  2:259409/140‑1 (MQ=255)

          aGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGctctc                                                                                                                          <  2:720683/140‑1 (MQ=255)

              atgaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCtttt                                                                                                                      >  2:213755/1‑140 (MQ=255)

              atgaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCtttt                                                                                                                      >  1:1172201/1‑140 (MQ=255)

                gaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTAt                                                                                                                    <  2:298919/140‑1 (MQ=255)

                gaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTAt                                                                                                                    >  1:1298602/1‑140 (MQ=255)

                gaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTAt                                                                                                                    <  1:100146/140‑1 (MQ=255)

                gaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTAt                                                                                                                    >  2:647953/1‑140 (MQ=255)

                 aCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTAtt                                                                                                                   >  1:936750/1‑140 (MQ=255)

                  cAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTg                                                                                                                  <  1:1161577/140‑1 (MQ=255)

                    aGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGAt                                                                                                                <  1:1375992/140‑1 (MQ=255)

                     gTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATc                                                                                                               >  2:914797/1‑140 (MQ=255)

                      tCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCt                                                                                                              <  1:555512/140‑1 (MQ=255)

                      tCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCt                                                                                                              <  1:636037/140‑1 (MQ=255)

                        cTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTa                                                                                                            <  1:1016344/140‑1 (MQ=255)

                        cTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTa                                                                                                            >  2:1152342/1‑140 (MQ=255)

                         ttGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTAc                                                                                                           <  2:1402590/140‑1 (MQ=255)

                         ttGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTAc                                                                                                           >  2:1543054/1‑140 (MQ=255)

                         ttGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTAc                                                                                                           <  2:485991/140‑1 (MQ=255)

                            agaTACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCa                                                                                                        <  1:372917/140‑1 (MQ=255)

                             gaTACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCAt                                                                                                       <  2:1488597/140‑1 (MQ=255)

                             gaTACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCAt                                                                                                       <  1:1396051/140‑1 (MQ=255)

                              aTACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATc                                                                                                      <  2:1008878/140‑1 (MQ=255)

                                 cGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTg                                                                                                   >  2:1152282/1‑140 (MQ=255)

                                 cGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTg                                                                                                   >  1:1470012/1‑140 (MQ=255)

                                  gTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGt                                                                                                  <  2:954596/140‑1 (MQ=255)

                                     gCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTatg                                                                                               >  1:1194158/1‑140 (MQ=255)

                                      cAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTatga                                                                                              >  2:1596676/1‑140 (MQ=255)

                                           ataACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCaa                                                                                         <  1:43032/140‑1 (MQ=255)

                                           ataACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCaa                                                                                         <  2:432971/140‑1 (MQ=255)

                                           ataACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCaa                                                                                         >  1:949817/1‑140 (MQ=255)

                                            taACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAg                                                                                        <  2:1172201/140‑1 (MQ=255)

                                                ccTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGa                                                                                    <  1:412163/140‑1 (MQ=255)

                                                  ttAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACt                                                                                  <  2:1538320/140‑1 (MQ=255)

                                                   tAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTa                                                                                 >  1:1498759/1‑140 (MQ=255)

                                                   tAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTa                                                                                 >  2:722631/1‑140 (MQ=255)

                                                   tAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTa                                                                                 >  1:327203/1‑140 (MQ=255)

                                                   tAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTa                                                                                 <  1:944336/140‑1 (MQ=255)

                                                    aaTGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTaa                                                                                >  1:1264557/1‑140 (MQ=255)

                                                    aaTGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTaa                                                                                <  1:1242753/140‑1 (MQ=255)

                                                    aaTGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTaa                                                                                <  2:467113/140‑1 (MQ=255)

                                                    aaTGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTaa                                                                                >  1:1086057/1‑140 (MQ=255)

                                                     aTGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCATAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTCTTGATCTTACGCATCCTGTATGATGCAAGCAGACTAAc                                                                               <  2:1350785/140‑1 (MQ=255)

                                                     aTGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAAc                                                                               <  1:328792/140‑1 (MQ=255)

                                                        cTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCt                                                                            <  2:942047/140‑1 (MQ=255)

                                                          aGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTAt                                                                          >  1:301934/1‑140 (MQ=255)

                                                            cGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCa                                                                        >  1:1127094/1‑140 (MQ=255)

                                                            cGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCa                                                                        <  2:905514/140‑1 (MQ=255)

                                                                aCCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGt                                                                    <  2:384038/140‑1 (MQ=255)

                                                                aCCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGt                                                                    <  1:1497040/140‑1 (MQ=255)

                                                                  cGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTg                                                                  <  1:929279/140‑1 (MQ=255)

                                                                      cGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGtat                                                              >  2:1357918/1‑140 (MQ=255)

                                                                       gCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGGCTAACCCTATCAACGTTGGtatt                                                             <  1:794364/140‑1 (MQ=255)

                                                                         tATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGtattat                                                           >  1:269278/1‑140 (MQ=255)

                                                                                     tCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACa                                               >  2:457267/1‑140 (MQ=255)

                                                                                       aaGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATg                                             <  1:137252/140‑1 (MQ=255)

                                                                                         gTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGAc                                           <  2:1194158/140‑1 (MQ=255)

                                                                                         gTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGAc                                           <  2:1987/140‑1 (MQ=255)

                                                                                            gTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCt                                        >  2:1254407/1‑140 (MQ=255)

                                                                                            gTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCt                                        >  1:1511815/1‑140 (MQ=255)

                                                                                            gTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCt                                        >  1:449731/1‑140 (MQ=255)

                                                                                              cTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCttt                                      >  2:879508/1‑140 (MQ=255)

                                                                                                tAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTa                                    <  2:1086057/140‑1 (MQ=255)

                                                                                                 aaTTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAg                                   <  2:1470012/140‑1 (MQ=255)

                                                                                                 aaTTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAg                                   <  2:949817/140‑1 (MQ=255)

                                                                                                 aaTTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAg                                   <  1:647953/140‑1 (MQ=255)

                                                                                                    tGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCAc                                >  1:1037652/1‑140 (MQ=255)

                                                                                                     gCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACt                               <  1:1543054/140‑1 (MQ=255)

                                                                                                     gCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACt                               <  2:1498759/140‑1 (MQ=255)

                                                                                                     gCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACt                               <  2:1298602/140‑1 (MQ=255)

                                                                                                       cAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCg                             >  1:619656/1‑140 (MQ=255)

                                                                                                       cAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCg                             <  1:1152282/140‑1 (MQ=255)

                                                                                                           aTCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTAt                         <  2:1358247/140‑1 (MQ=255)

                                                                                                            tCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGCCCCTTTTAGCACTCGGTATc                        <  1:880404/140‑1 (MQ=255)

                                                                                                            tCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATc                        <  1:1152342/140‑1 (MQ=255)

                                                                                                            tCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATc                        <  2:936750/140‑1 (MQ=255)

                                                                                                             cTAACGGCTTTCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCa                       <  2:1264557/140‑1 (MQ=255)

                                                                                                                      ttCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATaaaa              >  1:136013/1‑140 (MQ=255)

                                                                                                                       tCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAAc             <  1:720513/140‑1 (MQ=255)

                                                                                                                       tCGGCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAAc             <  1:1357918/140‑1 (MQ=255)

                                                                                                                         ggCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACgg           <  1:213755/140‑1 (MQ=255)

                                                                                                                          gCAATTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGc          <  1:722631/140‑1 (MQ=255)

                                                                                                                            aaTTACTCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCAc        <  1:914797/140‑1 (MQ=255)

                                                                                                                                  tCCAAAAGGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt  <  1:879508/140‑1 (MQ=255)

GCAGGGGCATAGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAA‑GGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAT  >  NC_000913/1263491‑1263759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A