Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	120	97.0	3206026	99.3%	3183583	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,681,793	T→C	T80A (ACC→GCC)	ydgC ←	GlpM family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,681,793	0	T	C	100.0%	274.8 / NA	74	T80A (ACC→GCC)	ydgC	GlpM family protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/47); total (27/47)

GACGCAGTTTCCCACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGTGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGA  >  NC_000913/1681658‑1681927

gACGCAGTTTCCCACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGaaa                                                                                                                                    <  1:1041770/140‑1 (MQ=255)

   gCAGTTTCCCACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATAc                                                                                                                                 <  2:633/140‑1 (MQ=255)

        ttCCCACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAg                                                                                                                            <  2:176840/140‑1 (MQ=255)

        ttCCCACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAg                                                                                                                            <  2:954301/140‑1 (MQ=255)

        ttCCCACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAg                                                                                                                            <  2:626342/140‑1 (MQ=255)

           ccACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGa                                                                                                                         <  1:119761/140‑1 (MQ=255)

            cACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGac                                                                                                                        <  1:1069728/140‑1 (MQ=255)

            cACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGac                                                                                                                        >  2:1527118/1‑140 (MQ=255)

              cTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACTCCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGacac                                                                                                                      <  2:36716/140‑1 (MQ=255)

              cTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGacac                                                                                                                      <  1:617980/140‑1 (MQ=255)

                 gATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAg                                                                                                                   >  1:1148136/1‑140 (MQ=255)

                    ggCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTa                                                                                                                >  1:1499911/1‑140 (MQ=255)

                     gCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTaa                                                                                                               <  1:1084143/140‑1 (MQ=255)

                      cGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTaaa                                                                                                              <  1:409928/140‑1 (MQ=255)

                        gtcgtcATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACa                                                                                                            <  1:232152/140‑1 (MQ=255)

                           gtcATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACaaaa                                                                                                         <  2:238601/140‑1 (MQ=255)

                           gtcATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACaaaa                                                                                                         <  2:179247/140‑1 (MQ=255)

                           gtcATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACaaaa                                                                                                         <  2:1321626/140‑1 (MQ=255)

                           gtcATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACaaaa                                                                                                         <  1:72717/140‑1 (MQ=255)

                               tCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAgg                                                                                                     <  1:1359761/140‑1 (MQ=255)

                                  gCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGaa                                                                                                  <  1:1451587/140‑1 (MQ=255)

                                  gCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGaa                                                                                                  <  2:628250/140‑1 (MQ=255)

                                      tAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGaataat                                                                                              <  2:1573412/140‑1 (MQ=255)

                                         tGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGa                                                                                           >  1:298027/1‑140 (MQ=255)

                                          gCAGCTTTATCCAGCATATAATCAACGCCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGAc                                                                                          <  2:966837/140‑1 (MQ=255)

                                           cAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGAcc                                                                                         <  1:88828/140‑1 (MQ=255)

                                           cAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGAcc                                                                                         <  2:1046310/140‑1 (MQ=255)

                                             gCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACcac                                                                                       <  2:1443494/140‑1 (MQ=255)

                                              cTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACcaca                                                                                      <  2:630908/140‑1 (MQ=255)

                                                        cATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTaaaaaa                                                                            >  1:195775/1‑139 (MQ=255)

                                                        cATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAat                                                                            >  2:565524/1‑140 (MQ=255)

                                                          tataATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAatga                                                                          <  1:555354/140‑1 (MQ=255)

                                                          tataATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAatga                                                                          >  2:345629/1‑140 (MQ=255)

                                                          tataATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAatga                                                                          >  2:792299/1‑140 (MQ=255)

                                                             aaTCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATgg                                                                       >  1:595035/1‑140 (MQ=255)

                                                                  acacCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTgcg                                                                  >  2:1358849/1‑140 (MQ=255)

                                                                   cacCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTgcgc                                                                 >  2:1129022/1‑140 (MQ=255)

                                                                   cacCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAACGAATCATTCCCGCGTAATACCACAGCGACAACAGGTAAACCAAAAAAGGAATAATCGACCACATACTAAAAATGATGGtgtcgc                                                                 >  2:1077297/1‑135 (MQ=255)

                                                                    acCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGcgcg                                                                >  2:1135289/1‑140 (MQ=255)

                                                                     cccATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGt                                                               >  2:362288/1‑140 (MQ=255)

                                                                     cccATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGt                                                               >  1:1503307/1‑140 (MQ=255)

                                                                      ccATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTa                                                              >  2:461674/1‑140 (MQ=255)

                                                                      ccATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTa                                                              >  2:412563/1‑140 (MQ=255)

                                                                        aTGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAg                                                            >  1:69592/1‑140 (MQ=255)

                                                                         tGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATgg                                                                       >  2:1254788/1‑128 (MQ=255)

                                                                         tGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATgg                                                                       <  1:1254788/128‑1 (MQ=255)

                                                                          gcgcTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGGAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGc                                                          >  2:1420772/1‑140 (MQ=255)

                                                                             cTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTc                                                       >  1:951127/1‑140 (MQ=255)

                                                                             cTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAAAAAAATAGGGAATAATCCACCACATACTAAAAATGATGGTTGCGCGCAAGGCTTc                                                       >  2:1575310/1‑140 (MQ=255)

                                                                                aTCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAAt                                                    >  2:709379/1‑140 (MQ=255)

                                                                                aTCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAAt                                                    >  1:1277601/1‑140 (MQ=255)

                                                                                    cccAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCcg                                                <  2:392873/140‑1 (MQ=255)

                                                                                          acGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCg                                          <  1:917117/140‑1 (MQ=255)

                                                                                            gCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCt                                        <  2:1468028/140‑1 (MQ=255)

                                                                                            gCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCt                                        <  1:1389584/140‑1 (MQ=255)

                                                                                              aaCAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGCCCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTgg                                      <  1:688238/140‑1 (MQ=255)

                                                                                              aaCAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTgg                                      <  1:345629/140‑1 (MQ=255)

                                                                                              aaCAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTgg                                      <  1:792299/140‑1 (MQ=255)

                                                                                              aaCAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTgg                                      >  1:664589/1‑140 (MQ=255)

                                                                                               aCAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGc                                     <  1:988482/140‑1 (MQ=255)

                                                                                               aCAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGc                                     <  1:583918/140‑1 (MQ=255)

                                                                                                cAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGca                                    <  2:1305388/140‑1 (MQ=255)

                                                                                                   aaCCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGcaaca                                 >  2:1489663/1‑140 (MQ=255)

                                                                                                      caacaaAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAata                              <  2:108125/140‑1 (MQ=255)

                                                                                                        acaaAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAAtata                            >  1:851840/1‑140 (MQ=255)

                                                                                                        acaaAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGGAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAAtata                            >  2:1532208/1‑140 (MQ=255)

                                                                                                         caaAAGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATaa                           <  2:664589/140‑1 (MQ=255)

                                                                                                           aaaGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATg                         <  1:565524/140‑1 (MQ=255)

                                                                                                            aaGCGGCGGGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATgc                        >  1:558958/1‑140 (MQ=255)

                                                                                                                 gcggGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGAt                   <  2:1140366/140‑1 (MQ=255)

                                                                                                                 gcggGCAAGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGAt                   <  2:836624/140‑1 (MQ=255)

                                                                                                                        aGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCa            <  1:1527118/140‑1 (MQ=255)

                                                                                                                        aGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCa            <  1:1599649/140‑1 (MQ=255)

                                                                                                                        aGCGCATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCa            <  1:1358849/140‑1 (MQ=255)

                                                                                                                         gcgcATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGTCCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCaa           <  1:1077297/140‑1 (MQ=255)

                                                                                                                         gcgcATCATTCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCaa           <  2:1148136/140‑1 (MQ=255)

                                                                                                                                  tCCGGCGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGa  <  2:69592/140‑1 (MQ=255)

GACGCAGTTTCCCACTTGATGGCGGTCGTCATCTGCGTTAATGCAGCTTTATCCAGCATATAATCAACACCCATGCGCTTATCCCCCAACACGCAACAGAACCAACAAAAGCGGCGGGCAAGCGCATCATTCCGGTGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGA  >  NC_000913/1681658‑1681927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A