Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 97.0 3206026 99.3% 3183583 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,781,798 T→C V135A (GTT→GCT)  ydiS → putative oxidoreductase with FAD/NAD(P)‑binding domain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,781,7980TC100.0% 363.9 / NA 97V135A (GTT→GCT) ydiSputative oxidoreductase with FAD/NAD(P)‑binding domain
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (52/45);  total (52/45)

Only 100 of 101 total aligned reads displayed.

TCACCGCGAGCAGCCAGATGTTCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGTTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGGAATGGTTCCCGCTTCCGATCCGCATCAT  >  NC_000913/1781664‑1781934
                                                                                                                                      |                                                                                                                                        
tCACCGCGAGCAGCCAGATGTTCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTg                                                                                                                                     >  1:518984/1‑140 (MQ=255)
 cACCGCGAGCAGCCAGATGTTCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGa                                                                                                                                    >  2:1543858/1‑140 (MQ=255)
     gcgAGCAGCCAGATGTTCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGa                                                                                                                                <  2:72219/140‑1 (MQ=255)
        agcagcCAGATGTTCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAAc                                                                                                                             <  1:854212/140‑1 (MQ=255)
                gATGTTCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCAc                                                                                                                     <  1:905954/140‑1 (MQ=255)
                    ttCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGc                                                                                                                 <  2:812778/140‑1 (MQ=255)
                     tCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGGCACTGGCg                                                                                                                >  1:423189/1‑140 (MQ=255)
                       cGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTg                                                                                                              <  1:795281/140‑1 (MQ=255)
                       cGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTg                                                                                                              <  2:197365/140‑1 (MQ=255)
                       cGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTg                                                                                                              <  1:238957/140‑1 (MQ=255)
                       cGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTg                                                                                                              <  2:518984/140‑1 (MQ=255)
                        gCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGc                                                                                                             <  2:1011886/140‑1 (MQ=255)
                           acacGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAgg                                                                                                          >  1:1011598/1‑140 (MQ=255)
                           acacGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAgg                                                                                                          <  2:285571/140‑1 (MQ=255)
                           acacGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAgg                                                                                                          <  1:1010088/140‑1 (MQ=255)
                           acacGCATCTTATACCGTACTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAgg                                                                                                          <  1:1200764/140‑1 (MQ=255)
                                cATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTggg                                                                                                     <  2:39051/140‑1 (MQ=255)
                                 aTCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTgggg                                                                                                    >  2:597927/1‑140 (MQ=255)
                                 aTCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTgggg                                                                                                    <  1:722018/140‑1 (MQ=255)
                                  tCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGga                                                                                                   <  1:1501094/140‑1 (MQ=255)
                                      ataCCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCCGGCCGGGgatgat                                                                                               >  1:235002/1‑140 (MQ=255)
                                        aCCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGGGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGatat                                                                                             >  2:1137666/1‑140 (MQ=255)
                                         ccGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATAtt                                                                                            >  1:398003/1‑140 (MQ=255)
                                           gTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGGCACTGGCGTGCAGGCTGGGGGTGATATtct                                                                                          >  2:191661/1‑140 (MQ=255)
                                            tATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATtctc                                                                                         >  1:1124963/1‑140 (MQ=255)
                                            tATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATtctc                                                                                         >  2:206501/1‑140 (MQ=255)
                                            tATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATtctc                                                                                         >  2:765671/1‑140 (MQ=255)
                                            tATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGACACTGGCGTGCAGGCTGGGGATGATATtctc                                                                                         >  2:1136941/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGGTGATATtctcc                                                                                        >  2:466952/1‑139 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGGTGATATTCTCg                                                                                        >  2:1107775/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  1:675230/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  1:1453239/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  1:1498074/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  1:803297/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  1:309903/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  2:781476/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  1:1442153/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  1:1362372/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCg                                                                                        >  2:766927/1‑140 (MQ=255)
                                             aTTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGACACAGGCGTGCAGGCTGGGGATGATATtcccc                                                                                        >  2:408240/1‑137 (MQ=255)
                                               tGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCGGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGaa                                                                                      >  2:1164292/1‑140 (MQ=255)
                                               tGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGaa                                                                                      >  1:177932/1‑140 (MQ=255)
                                               tGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGGGAAGGAAACAAGGGCACTGGCGTGCAGGCTGGGGGTGATATtctccga                                                                                      >  2:1534546/1‑137 (MQ=255)
                                               tGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCAACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGaa                                                                                      >  2:1406912/1‑140 (MQ=255)
                                                gCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTTGCGCCCACGCCCCGGCTCGGGAGGGAAACAAGGTCACCGGCCCGCAGGCTGGGGACGTCATtctcagac                                                                                     >  2:737851/1‑136 (MQ=255)
                                                gCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAg                                                                                     <  2:18771/140‑1 (MQ=255)
                                                gCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAg                                                                                     <  1:220362/140‑1 (MQ=255)
                                                gCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAg                                                                                     <  1:1425459/140‑1 (MQ=255)
                                                 cGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGGTGATATTCTCGAAGc                                                                                    >  2:851825/1‑140 (MQ=255)
                                                 cGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGc                                                                                    >  1:1494006/1‑140 (MQ=255)
                                                 cGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGc                                                                                    <  1:949471/140‑1 (MQ=255)
                                                 cGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCCAAGc                                                                                    >  1:303845/1‑140 (MQ=255)
                                                   tAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGa                                                                                  <  2:920374/140‑1 (MQ=255)
                                                      tCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAAtg                                                                               >  1:1406157/1‑140 (MQ=255)
                                                      tCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAAtg                                                                               >  1:738045/1‑140 (MQ=255)
                                                           tGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGGTGGTATTCTCGGAGCGAATgtgggg                                                                          >  2:491688/1‑138 (MQ=255)
                                                           tGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGGCGACGCGCTGGCTCGGGAAGGAAACAAGGGCACTGGCGTGCAGGCTGGGGGCGATATTCCCGAAGCGCATgcgggg                                                                          >  2:1268128/1‑138 (MQ=255)
                                                              aCCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGAtt                                                                       <  2:878596/140‑1 (MQ=255)
                                                              aCCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGAtt                                                                       <  2:1124963/140‑1 (MQ=255)
                                                               cccGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTc                                                                      <  1:796914/140‑1 (MQ=255)
                                                                  gTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTgg                                                                   >  1:349517/1‑140 (MQ=255)
                                                                   tGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCG‑ATGGGGGGATTCTGGcg                                                                 >  2:679578/1‑139 (MQ=255)
                                                                      ttGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGa                                                               <  1:373368/140‑1 (MQ=255)
                                                                         aTGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATgg                                                            >  1:1375995/1‑140 (MQ=255)
                                                                         aTGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATgg                                                            <  2:471269/140‑1 (MQ=255)
                                                                           ggAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCg                                                          <  1:969385/140‑1 (MQ=255)
                                                                             aaCAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGtt                                                        <  1:1543858/140‑1 (MQ=255)
                                                                             aaCAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGGGATTCTGGCTGATGGCGtt                                                        >  2:256176/1‑140 (MQ=255)
                                                                              aCAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTa                                                       >  1:853594/1‑140 (MQ=255)
                                                                                aaGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCCGGGGATGATATTCTCGAAGCGGATGTGGGGATTCTGGCTGATGGCGGTAAc                                                     >  2:196833/1‑140 (MQ=255)
                                                                                              ggcgCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTACCTCGATGCTTGGCcg                                       <  2:1484986/140‑1 (MQ=255)
                                                                                              ggcgCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCcg                                       <  2:1442153/140‑1 (MQ=255)
                                                                                                 gcgcAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCcgctc                                    <  1:1038315/140‑1 (MQ=255)
                                                                                                 gcgcAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCcgctc                                    <  1:545935/140‑1 (MQ=255)
                                                                                                               aGGCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGAAGATATTCTCGGAGCGAATGTGCTGAATCTGGCGCATGGCGTGAACTCGATGCTTGGCCGCCCGCATGACATGGTTc                      >  2:1073248/1‑140 (MQ=255)
                                                                                                                ggCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTcc                     <  1:1137666/140‑1 (MQ=255)
                                                                                                                ggCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTcc                     <  2:1406157/140‑1 (MQ=255)
                                                                                                                ggCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTcc                     <  2:1453239/140‑1 (MQ=255)
                                                                                                                 gCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTccc                    >  1:22152/1‑140 (MQ=255)
                                                                                                                 gCGTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTccc                    >  1:451794/1‑140 (MQ=255)
                                                                                                                 gCGTTCGCGTCGACGCGCTGGCCCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTCGCTGGTGGCGTTAACTCGAAGCTTGGCCGCTCGCTGGAAATGGTTccc                    >  2:1367201/1‑140 (MQ=255)
                                                                                                                   gTTCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGc                  <  1:333030/140‑1 (MQ=255)
                                                                                                                     tCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCCCTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAAGGAGGCGATTCTGGCTGATGGCGTTAACTCGATGCTTCGCCGCTCGCTGGAAATGGATCCCGCtc                >  2:1193178/1‑139 (MQ=255)
                                                                                                                     tCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCtt                <  1:1343964/140‑1 (MQ=255)
                                                                                                                     tCGCGTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGCGCAGGCTGGGGCTGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGGTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCtt                >  2:481171/1‑140 (MQ=255)
                                                                                                                      cgcgTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTc               >  1:277166/1‑140 (MQ=255)
                                                                                                                      cgcgTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTc               >  1:541477/1‑140 (MQ=255)
                                                                                                                      cgcgTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTc               >  1:423559/1‑140 (MQ=255)
                                                                                                                      cgcgTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTc               <  1:144714/140‑1 (MQ=255)
                                                                                                                        cgTCGACGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCg             <  2:423189/140‑1 (MQ=255)
                                                                                                                             aCGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCg        <  1:1506278/140‑1 (MQ=255)
                                                                                                                             aCGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCg        <  1:766927/140‑1 (MQ=255)
                                                                                                                             aCGCGCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCg        <  2:479901/140‑1 (MQ=255)
                                                                                                                              cgcgCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCGc       >  2:1342460/1‑140 (MQ=255)
                                                                                                                              cgcgCTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCGc       >  2:324359/1‑140 (MQ=255)
                                                                                                                               gcgcTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCGca      <  1:1268128/140‑1 (MQ=255)
                                                                                                                               gcgcTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCGca      <  1:256176/140‑1 (MQ=255)
                                                                                                                                cgcTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCGcat     <  2:738045/140‑1 (MQ=255)
                                                                                                                                cgcTGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCGcat     <  1:99678/140‑1 (MQ=255)
                                                                                                                                   tGGCTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGAAATGGTTCCCGCTTCCGATCCGcatcat  >  2:81889/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                        
TCACCGCGAGCAGCCAGATGTTCCGCAACACGCATCTTATACCGTATTGCGTAATCGTCTGGACCCGTGGTTGATGGAACAAGCCGAGCAGGCGGGCGCGCAGTTTATCCCAGGCGTTCGCGTCGACGCGCTGGTTCGTGAAGGAAACAAGGTCACTGGCGTGCAGGCTGGGGATGATATTCTCGAAGCGAATGTGGTGATTCTGGCTGATGGCGTTAACTCGATGCTTGGCCGCTCGCTGGGAATGGTTCCCGCTTCCGATCCGCATCAT  >  NC_000913/1781664‑1781934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A