Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
120 |
97.0 |
3206026 |
99.3% |
3183583 |
140.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,342,107 |
(G)6→7 |
coding (842/987 nt) |
kdsD → |
D‑arabinose 5‑phosphate isomerase KdsD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,342,101 | 1 | . | G | 98.6%
| 256.8
/ ‑3.3
| 69 | coding (836/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (51/17); total (52/17) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
ACCCGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑GGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCA > NC_000913/3341962‑3342224
|
aCCCGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑Gc‑c > 1:490128/1‑140 (MQ=255)
cccGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑g > 1:1185721/1‑140 (MQ=255)
ccGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑gg < 2:1059112/140‑1 (MQ=255)
ccGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑gg < 1:235098/140‑1 (MQ=255)
ccGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑gg < 1:1447007/140‑1 (MQ=255)
ccGCAAAAATCTTGGTATGACTGTCATTCGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑gg < 2:1220710/140‑1 (MQ=255)
gCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑gggg < 2:989783/140‑1 (MQ=255)
gCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑gggg < 1:1055955/140‑1 (MQ=255)
cAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑ggggg < 2:267967/140‑1 (MQ=255)
aaaaaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑ggggg‑g > 1:1258977/1‑140 (MQ=255)
aaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑ggggg‑ggaa < 2:273735/140‑4 (MQ=255)
tGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACgt > 1:860201/1‑140 (MQ=255)
tATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGtgtg < 2:1044850/140‑1 (MQ=255)
tATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGtgtg < 1:83100/140‑1 (MQ=255)
tGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTgcg < 2:226486/140‑1 (MQ=255)
aCTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGcc < 1:517522/140‑1 (MQ=255)
gTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTg < 2:1000854/140‑1 (MQ=255)
tCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTgg > 1:1340650/1‑140 (MQ=255)
tCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTgg > 1:964462/1‑140 (MQ=255)
cATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGc > 2:153097/1‑140 (MQ=255)
aTTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCa > 1:786172/1‑140 (MQ=255)
aTGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGc < 1:517591/140‑1 (MQ=255)
tGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGcc > 2:1131682/1‑140 (MQ=255)
aaTATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTg < 2:739369/140‑1 (MQ=255)
aaTATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTg < 1:1494066/140‑1 (MQ=255)
aaTATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTg < 2:976138/140‑1 (MQ=255)
tatGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAg < 2:1200380/140‑1 (MQ=255)
gatgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCa < 2:1190298/140‑1 (MQ=255)
tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGTCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt < 1:782878/140‑1 (MQ=255)
tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt < 1:1444197/140‑1 (MQ=255)
tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt < 2:244006/140‑1 (MQ=255)
tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt < 1:189158/140‑1 (MQ=255)
tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACt < 2:606988/140‑1 (MQ=255)
gatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTg > 1:1363771/1‑140 (MQ=255)
gatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTg > 2:538382/1‑140 (MQ=255)
atTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGa > 2:325439/1‑140 (MQ=255)
atTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGa > 2:1038103/1‑140 (MQ=255)
ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa > 1:997029/1‑140 (MQ=255)
ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa > 2:491999/1‑140 (MQ=255)
ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa > 2:724962/1‑140 (MQ=255)
ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa > 1:1525948/1‑140 (MQ=255)
ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa > 2:879724/1‑140 (MQ=255)
tGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAAc > 1:37262/1‑140 (MQ=255)
tGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAAc < 1:372582/140‑1 (MQ=255)
gAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACt > 1:1508913/1‑140 (MQ=255)
gAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACt > 1:420261/1‑140 (MQ=255)
gAAGGCATCTTTACCGACGGTGATTTACGCCGTGACTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACt > 1:1479987/1‑140 (MQ=255)
aaGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACtt > 2:1511603/1‑140 (MQ=255)
ggCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTaa > 2:523972/1‑140 (MQ=255)
cATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATg > 1:798242/1‑140 (MQ=255)
tCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCCGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCa > 1:1330720/1‑140 (MQ=255)
tCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCa > 1:857155/1‑140 (MQ=255)
tACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTcc > 1:561144/1‑140 (MQ=255)
tACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGAcc > 1:1027251/1‑140 (MQ=255)
aCGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCa > 1:660165/1‑140 (MQ=255)
cGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCat > 1:1007026/1‑140 (MQ=255)
ggTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCata > 1:550028/1‑140 (MQ=255)
gTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ATGCGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCatat > 1:660588/1‑140 (MQ=255)
gTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCatat > 1:272886/1‑140 (MQ=255)
tGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATc > 1:666323/1‑140 (MQ=255)
gATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCa > 2:927235/1‑140 (MQ=255)
tttACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCAcc > 1:1094613/1‑140 (MQ=255)
tgtCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATg > 1:663615/1‑140 (MQ=255)
tgtCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATg > 2:615727/1‑140 (MQ=255)
tgtCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑GGGGGAG‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATg > 2:1251114/1‑140 (MQ=255)
tCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGt > 2:574515/1‑140 (MQ=255)
tCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGt > 2:957517/1‑140 (MQ=255)
atatGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGa > 1:1527860/1‑140 (MQ=255)
gggCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGc > 1:621638/1‑140 (MQ=255)
gCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGa > 2:1447298/1‑140 (MQ=255)
ggTGGATGTTCGTCAGTAAAGTTTTGCCGATG‑TGATGCCGGG‑G‑GGGGG‑G‑ATT‑AGGTGTGCCCCCTGGCTTCCTGGCCGTGGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGAc < 2:1340650/139‑1 (MQ=255)
gTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGAcc > 1:853916/1‑140 (MQ=255)
gTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGCCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGAcc > 1:990715/1‑140 (MQ=255)
gATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCAtt > 1:862876/1‑140 (MQ=255)
ttGTTCGTCAGTTAAGTATTGCCGAGG‑TGATGCC‑GC‑G‑GGGGG‑GAAAT‑ACGTGTGCGCCCGGGCTTTGGGGCCGTGGGGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCAttt < 2:920324/139‑1 (MQ=255)
tGTTCGTCAGTTAAGTATTGCCGTTG‑TGATGCCGGG‑G‑GGGGG‑G‑AGT‑CGGTGGGCCCCGTGGTTTTGGGGCGGTGGGGGCAGTAAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTa < 2:517812/140‑1 (MQ=255)
tGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTa > 1:1161383/1‑140 (MQ=255)
ttCGTCGTTTAAGTTTTGCCGATG‑TGATGGC‑GCGG‑GGGGG‑G‑AAT‑ACGTGTGCGCCCGGGCTTTGTGGCTGTTGGGGCGCTGAACTTAAGGATGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACt < 2:582761/140‑1 (MQ=255)
ttCGTCGGTTAAGTTTGGCCGTTG‑TGATGCC‑GCGG‑GGGGG‑G‑AAT‑GCGTGTGCGCCCTGGCTTCCTGGCGGTTGAGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACt < 2:1258977/140‑1 (MQ=255)
tCGTCAGTTAAGTTTTGCCGATG‑TGATGCG‑GG‑G‑GGGGG‑G‑GATGGGGTGGCCCCCCGGGCATTCGGGCGGTGGAGGCACTGAACTAAATGCATTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTc < 2:272886/140‑1 (MQ=255)
cGTCAGTTAGGTATTGCGGATG‑TGATGAC‑GCGG‑GGGGG‑G‑AAG‑ACGGGTCCCCCCTGGCTTTCTGGCTGTTGAGTCACTTAGCTTAATCCCGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCg < 2:798242/140‑1 (MQ=255)
tgaGTTAGGTTTTGCCGGTG‑TGAGGCCGGG‑G‑GGGGG‑G‑AAT‑AGGTGGGCGCCCTGTCTTTCGGGCCGTTGAGGCACTGAACTAAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgt < 2:287743/138‑1 (MQ=255)
tcggTTAAGTATGGCCGATGTTGGGGCG‑GG‑G‑GGGGG‑G‑AAT‑TCGGGGGCGCCCGGGCTTTCGGGCCGTGGGGGCACTGAATTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgt < 2:1007026/137‑1 (MQ=255)
gTTAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgtg > 1:1055579/1‑140 (MQ=255)
ttAAGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgtgt > 1:1327871/1‑140 (MQ=255)
taaaGTGTGGCGGATG‑GGATGGC‑GCGG‑GGGGG‑G‑AAT‑GCGTGGGCCCCCTGGTTTTCGGGCGGTTGGGGCACTGAACTAAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGgtgtgt < 2:997029/138‑1 (MQ=255)
aGTATTGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTAc > 1:1058793/1‑140 (MQ=255)
ttttGCGGATG‑TAATGCC‑GC‑C‑GGGGGAG‑AGT‑CCGTGTCCCCCCTGGCTTTCTGGCGGTTGAGGCACTGATTTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACat < 2:550028/138‑1 (MQ=255)
ttGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACatat > 2:234357/1‑140 (MQ=255)
tGCCGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATg > 2:1354797/1‑140 (MQ=255)
ccGATG‑TGATGAC‑GC‑CGGGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCa > 1:1406613/1‑140 (MQ=255)
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ACCCGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATG‑TGATGAC‑GC‑C‑GGGGG‑G‑AAT‑ACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCA > NC_000913/3341962‑3342224
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
