Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	134	60.5	2175152	94.0%	2044642	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,834,839	A→G	Y11C (TAC→TGC)	ydjZ →	DedA family protein YdjZ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,834,839	0	A	G	100.0%	92.4 / NA	27	Y11C (TAC→TGC)	ydjZ	DedA family protein YdjZ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/16); total (11/16)

AAAACGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGA  >  NC_000913/1834703‑1834965

aaaaCGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGtgcta                                                                                                                             <  1:1040163/140‑1 (MQ=255)

aaaaCGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGtgcta                                                                                                                             <  1:452568/140‑1 (MQ=255)

     gtggtgAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGta                                                                                                                        <  2:342137/140‑1 (MQ=255)

       ggtgAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGtata                                                                                                                      <  1:573551/140‑1 (MQ=255)

                        aGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCtgtt                                                                                                     <  1:233592/140‑1 (MQ=255)

                              tGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGc                                                                                               >  1:77702/1‑140 (MQ=255)

                                  tCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTAtg                                                                                           <  1:571990/140‑1 (MQ=255)

                                          cccGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGc                                                                                   >  1:500634/1‑140 (MQ=255)

                                           ccGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCa                                                                                  >  2:529119/1‑140 (MQ=255)

                                               cggATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATggg                                                                              <  1:497072/140‑1 (MQ=255)

                                               cggATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATggg                                                                              <  2:392536/140‑1 (MQ=255)

                                                 gATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGgcg                                                                            <  2:646947/140‑1 (MQ=255)

                                                         gCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTcc                                                                    <  2:77702/140‑1 (MQ=255)

                                                              cAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCg                                                               <  1:763732/140‑1 (MQ=255)

                                                                       ccTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGt                                                      >  1:798896/1‑140 (MQ=255)

                                                                                  gCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGc                                           >  2:18801/1‑140 (MQ=255)

                                                                                                        gatgatgatgatGCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGccgccg                     <  1:149192/140‑1 (MQ=255)

                                                                                                            atgatgatgCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGa                 >  2:988555/1‑140 (MQ=255)

                                                                                                               atgatgCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCa              <  1:436255/140‑1 (MQ=255)

                                                                                                               atgatgCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCa              >  2:436255/1‑140 (MQ=255)

                                                                                                                tgatgCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCaa             <  2:798896/140‑1 (MQ=255)

                                                                                                                 gatgCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAAc            <  2:500634/140‑1 (MQ=255)

                                                                                                                  atgCAATCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACa           <  1:529119/140‑1 (MQ=255)

                                                                                                                       aTCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCa              <  2:267734/132‑1 (MQ=255)

                                                                                                                       aTCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCa              >  1:267734/1‑132 (MQ=255)

                                                                                                                       aTCGCGAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTACCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGta      >  1:883949/1‑140 (MQ=255)

                                                                                                                           cgAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACa           <  2:1036181/131‑1 (MQ=255)

                                                                                                                           cgAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACa           >  1:1036181/1‑131 (MQ=255)

                                                                                                                           cgAAAAATCTGGTGCTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGa  >  1:4715/1‑140 (MQ=255)

AAAACGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGA  >  NC_000913/1834703‑1834965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A