Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	116	98.7	3298914	99.2%	3272522	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,765,480	C→T	G51G (GGG→GGA)	menI ←	1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,765,480	0	C	T	100.0%	273.8 / NA	79	G51G (GGG→GGA)	menI	1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (32/47); total (32/47)

GCCCTTCTCGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAACCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGCTTCCAGGGTGAT  >  NC_000913/1765344‑1765614

gCCCTTCTCGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCg                                                                                                                                     >  2:1448535/1‑140 (MQ=255)

gCCCTTCTCGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCg                                                                                                                                     <  1:1600030/140‑1 (MQ=255)

gCCCTTCTCGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCg                                                                                                                                     <  1:1576456/140‑1 (MQ=255)

  ccTTCTCGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGaa                                                                                                                                   <  2:892133/140‑1 (MQ=255)

  ccTTCTCGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGaa                                                                                                                                   <  2:10544/140‑1 (MQ=255)

        cGTGCCGAGTGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGgctg                                                                                                                             <  1:1476656/140‑1 (MQ=255)

        cGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGgctg                                                                                                                             <  2:498831/140‑1 (MQ=255)

        cGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGgctg                                                                                                                             <  2:1457249/140‑1 (MQ=255)

            ccGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCttt                                                                                                                         >  2:753687/1‑140 (MQ=255)

            ccGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCttt                                                                                                                         >  1:1447332/1‑140 (MQ=255)

                gCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTcc                                                                                                                     <  1:316756/140‑1 (MQ=255)

                  ggACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCcgc                                                                                                                   <  2:811338/140‑1 (MQ=255)

                  ggACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCcgc                                                                                                                   <  1:995200/140‑1 (MQ=255)

                    aCGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGa                                                                                                                 <  1:114650/140‑1 (MQ=255)

                    aCGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGa                                                                                                                 <  2:810408/140‑1 (MQ=255)

                           tAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACt                                                                                                          <  1:366598/140‑1 (MQ=255)

                              cATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGc                                                                                                       >  1:1396648/1‑140 (MQ=255)

                              cATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGc                                                                                                       >  2:763565/1‑140 (MQ=255)

                               aTTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCa                                                                                                      <  2:1443043/140‑1 (MQ=255)

                                 tGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCAtt                                                                                                    <  1:675188/140‑1 (MQ=255)

                                  gATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATGCTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTg                                                                                                   <  1:840424/140‑1 (MQ=255)

                                   aTTTCCAGGCCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGt                                                                                                  <  2:1196053/140‑1 (MQ=255)

                                   aTTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGt                                                                                                  <  2:318389/140‑1 (MQ=255)

                                   aTTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGt                                                                                                  <  1:711028/140‑1 (MQ=255)

                                   aTTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGt                                                                                                  >  1:738625/1‑140 (MQ=255)

                                   aTTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGt                                                                                                  <  2:663852/140‑1 (MQ=255)

                                   aTTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGt                                                                                                  >  2:272655/1‑140 (MQ=255)

                                        cAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCtt                                                                                             >  1:687461/1‑140 (MQ=255)

                                         aGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTc                                                                                            <  2:804125/140‑1 (MQ=255)

                                          gACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCa                                                                                           <  1:1280727/140‑1 (MQ=255)

                                             caaccaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAgg                                                                                        <  2:614785/140‑1 (MQ=255)

                                             caaccaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAgg                                                                                        <  2:44777/140‑1 (MQ=255)

                                             caaccaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAgg                                                                                        <  1:1448535/140‑1 (MQ=255)

                                             caaccaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAgg                                                                                        <  1:257182/140‑1 (MQ=255)

                                             caaccaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAgg                                                                                        <  1:1281979/140‑1 (MQ=255)

                                               accaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAgggg                                                                                      >  2:338573/1‑139 (MQ=255)

                                               accaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAgggg                                                                                      >  2:451512/1‑139 (MQ=255)

                                               accaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGgt                                                                                      <  2:382608/140‑1 (MQ=255)

                                                ccaCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGgtg                                                                                     >  1:466234/1‑140 (MQ=255)

                                                 caCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGgtgt                                                                                    <  1:1087933/140‑1 (MQ=255)

                                                 caCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGgtgt                                                                                    <  2:143961/140‑1 (MQ=255)

                                                 caCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGgtgt                                                                                    <  1:80703/140‑1 (MQ=255)

                                                 caCTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACAGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGgtgt                                                                                    <  1:1553614/140‑1 (MQ=255)

                                                      tttGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGtcatca                                                                               <  2:480286/140‑1 (MQ=255)

                                                       ttGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCAc                                                                              <  1:552278/140‑1 (MQ=255)

                                                         gCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGGCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCa                                                                            >  2:139336/1‑140 (MQ=255)

                                                           tCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCTCGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAat                                                                          <  2:106063/140‑1 (MQ=255)

                                                              ccTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATg                                                                       >  1:558420/1‑140 (MQ=255)

                                                                ttCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGtt                                                                     <  2:887512/140‑1 (MQ=255)

                                                                          aaataaCCGGCAACGGAGCCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAat                                                           <  2:307076/140‑1 (MQ=255)

                                                                           aataaCCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAata                                                          >  2:845569/1‑140 (MQ=255)

                                                                            ataaCCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAatat                                                         >  1:88004/1‑140 (MQ=255)

                                                                               aCCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCa                                                      >  2:69819/1‑140 (MQ=255)

                                                                               aCCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCa                                                      >  2:1401654/1‑140 (MQ=255)

                                                                               aCCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCa                                                      >  2:89705/1‑140 (MQ=255)

                                                                                 cGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCACCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAgg                                                    >  2:1403531/1‑140 (MQ=255)

                                                                                 cGGCAACGGAACCGATACTTTCGGCCAGCACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGCGTCATCACCAATATGTTCTAATCGAATATCCAgt                                                    >  1:347003/1‑139 (MQ=255)

                                                                                  ggCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGa                                                   <  1:1369854/140‑1 (MQ=255)

                                                                                             cGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATg                                        <  1:1265027/140‑1 (MQ=255)

                                                                                              gATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGt                                       <  2:1447332/140‑1 (MQ=255)

                                                                                                   tttCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCt                                  <  2:1386533/140‑1 (MQ=255)

                                                                                                    ttCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCtt                                 >  1:1389556/1‑140 (MQ=255)

                                                                                                    ttCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCtt                                 >  2:1134585/1‑140 (MQ=255)

                                                                                                     tCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTc                                >  2:303356/1‑140 (MQ=255)

                                                                                                     tCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTc                                >  1:1186208/1‑140 (MQ=255)

                                                                                                     tCGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTc                                <  1:929900/140‑1 (MQ=255)

                                                                                                      cGGCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCa                               >  1:1257681/1‑140 (MQ=255)

                                                                                                       ggCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCAc                              <  1:1196136/140‑1 (MQ=255)

                                                                                                       ggCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCAc                              <  2:738625/140‑1 (MQ=255)

                                                                                                        gCCAGTACCACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCAcc                             >  1:1165923/1‑140 (MQ=255)

                                                                                                               ccACGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCa                      <  1:272655/140‑1 (MQ=255)

                                                                                                                  cGGATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTc                   >  2:1342002/1‑140 (MQ=255)

                                                                                                                    gATGCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAg                 <  1:1293821/140‑1 (MQ=255)

                                                                                                                       gCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCGTCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGc              >  1:1169521/1‑140 (MQ=255)

                                                                                                                       gCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGc              >  1:1263910/1‑140 (MQ=255)

                                                                                                                       gCTCCTCCATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGc              >  2:964675/1‑140 (MQ=255)

                                                                                                                            tccATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGCTTCCa         <  1:910991/140‑1 (MQ=255)

                                                                                                                              cATGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGCTTCCAgg       >  2:1111876/1‑140 (MQ=255)

                                                                                                                                tGCAGCAATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGCTTCCAGGGt     >  1:917256/1‑140 (MQ=255)

                                                                                                                                   agcaATCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGCTTCCAGGGTGAt  >  1:280161/1‑140 (MQ=255)

GCCCTTCTCGTGCCGAGCGGACGTGGTTAGCATTGATTTCCAGACCAACCACTTTTTGCTCACCTTCGGTACATAAATAACCGGCAACGGAACCGATACTTTCGGCCAGTACCACGGATGCTCCTCCATGCAGCAACCCGAAAGGCTGCTTTGTCCGCGAGTCTACTGGCATTGTCGCTTCAAGGGTGTCATCACCAATATGTTCAAAGCGAATATCCAGGAACCCCACCATGTTTCCTTCACCCATAGCATTCAGTGCTTCCAGGGTGAT  >  NC_000913/1765344‑1765614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A