Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	116	98.7	3298914	99.2%	3272522	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,512,088	T→C	T207A (ACG→GCG)	mntH ←	Mn(2(+))/Fe(2(+)): H(+) symporter MntH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,512,088	0	T	C	100.0%	237.1 / NA	63	T207A (ACG→GCG)	mntH	Mn(2(+))/Fe(2(+)): H(+) symporter MntH
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/41); total (22/41)

CGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGTCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCCGCGGCAACAAA  >  NC_000913/2511951‑2512220

cGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAAtcgccg                                                                                                                                    >  2:288619/1‑140 (MQ=255)

 gCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATcgccgc                                                                                                                                   <  1:287476/140‑1 (MQ=255)

  ccAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCCCATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCgccgcc                                                                                                                                  <  1:226933/140‑1 (MQ=255)

  ccAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCgccgcc                                                                                                                                  >  2:684860/1‑140 (MQ=255)

             aaaCCGGCAATAGTCATGGCGATGGCCACATCCCATTTGGTGGCGGAATAACGTTGTGGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTACAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGcc                                                                                                                       <  2:78209/140‑1 (MQ=255)

             aaaCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGcc                                                                                                                       <  2:1296575/140‑1 (MQ=255)

             aaaCCGGCAATAGTCAGGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTGGACGCGAACCGCCATGTAAATGCTGAGTAAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGcc                                                                                                                       <  1:517378/140‑1 (MQ=255)

               aCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCctg                                                                                                                     <  1:106028/140‑1 (MQ=255)

               aCCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCctg                                                                                                                     <  1:759941/140‑1 (MQ=255)

                 cGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCctgct                                                                                                                   <  2:989175/140‑1 (MQ=255)

                 cGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCctgct                                                                                                                   <  2:1642670/140‑1 (MQ=255)

                 cGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCctgct                                                                                                                   >  1:355834/1‑140 (MQ=255)

                    cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGcc                                                                                                                >  2:917829/1‑140 (MQ=255)

                    cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGcc                                                                                                                >  1:93018/1‑140 (MQ=255)

                    cAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGcc                                                                                                                >  1:721830/1‑140 (MQ=255)

                       tAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAgg                                                                                                             <  2:105485/140‑1 (MQ=255)

                         gTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGaa                                                                                                           <  2:508397/140‑1 (MQ=255)

                            aTGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGGGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGAc                                                                                                        <  2:412138/140‑1 (MQ=255)

                            aTGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGAc                                                                                                        <  1:1456539/140‑1 (MQ=255)

                            aTGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAAGAAGAc                                                                                                        <  1:30364/140‑1 (MQ=255)

                              ggCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATACTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCg                                                                                                      <  2:1288792/140‑1 (MQ=255)

                                  aTAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTc                                                                                                  <  1:1174954/140‑1 (MQ=255)

                                    aGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCg                                                                                                >  2:685728/1‑140 (MQ=255)

                                    aGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCg                                                                                                >  1:291230/1‑140 (MQ=255)

                                          aTCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAg                                                                                          >  1:1276482/1‑140 (MQ=255)

                                                tttGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAAc                                                                                    >  2:116250/1‑140 (MQ=255)

                                                     tggCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCggg                                                                               >  2:1618945/1‑140 (MQ=255)

                                                       gCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCGCATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGAt                                                                             <  1:1033824/140‑1 (MQ=255)

                                                       gCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGAt                                                                             <  2:42319/140‑1 (MQ=255)

                                                        cGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATc                                                                            >  1:440452/1‑140 (MQ=255)

                                                          gAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCAc                                                                          <  1:1524408/140‑1 (MQ=255)

                                                          gAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCAc                                                                          <  1:243037/140‑1 (MQ=255)

                                                          gAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCAc                                                                          <  1:771073/140‑1 (MQ=255)

                                                            aTAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATTGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCa                                                                        <  2:87210/140‑1 (MQ=255)

                                                            aTAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCa                                                                        <  2:1255227/140‑1 (MQ=255)

                                                                         cgcgAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAg                                                           <  2:883641/140‑1 (MQ=255)

                                                                         cgcgAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAg                                                           >  2:807340/1‑140 (MQ=255)

                                                                         cgcgAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAg                                                           <  2:221386/140‑1 (MQ=255)

                                                                         cgcgAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGAGATCACCATTCCTTTACCCAg                                                           <  2:64580/140‑1 (MQ=255)

                                                                          gcgAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGc                                                          <  1:939338/140‑1 (MQ=255)

                                                                          gcgAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCACCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGc                                                          >  2:456945/1‑140 (MQ=255)

                                                                              aCCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTgcg                                                      <  1:354516/140‑1 (MQ=255)

                                                                              aCCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTgcg                                                      <  1:1539273/140‑1 (MQ=255)

                                                                              aCCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTgcg                                                      <  2:537542/140‑1 (MQ=255)

                                                                              aCCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTgcg                                                      <  1:281022/140‑1 (MQ=255)

                                                                              aCCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTgcg                                                      <  2:544543/140‑1 (MQ=255)

                                                                              aCCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTgcg                                                      <  1:1061279/140‑1 (MQ=255)

                                                                              aCCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTgcg                                                      <  1:684860/140‑1 (MQ=255)

                                                                                cGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGcc                                                    <  2:721830/140‑1 (MQ=255)

                                                                                    aTGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGt                                                <  1:1618945/140‑1 (MQ=255)

                                                                                                agtgagCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGgaga                                    >  1:68302/1‑140 (MQ=255)

                                                                                                agtgagCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGgaga                                    >  1:599967/1‑140 (MQ=255)

                                                                                                 gtgagCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGaa                                   >  2:254806/1‑140 (MQ=255)

                                                                                                  tgagCGAGGAGTGCAAATAAATCACATGCGGCATAATCGCCG‑CCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGaaaa                                 >  2:373130/1‑140 (MQ=255)

                                                                                                         ggagTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACt                           <  2:722200/140‑1 (MQ=255)

                                                                                                          gagTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTc                          >  1:1225970/1‑140 (MQ=255)

                                                                                                            gTGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGa                        <  1:650134/140‑1 (MQ=255)

                                                                                                             tGCAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGAc                       <  1:552448/140‑1 (MQ=255)

                                                                                                               cAAATAAATCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACaa                     >  2:89718/1‑140 (MQ=255)

                                                                                                                     aatCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAg               >  1:590781/1‑140 (MQ=255)

                                                                                                                     aatCACATGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAg               >  2:792459/1‑140 (MQ=255)

                                                                                                                        cacaTGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCcg            <  1:807340/140‑1 (MQ=255)

                                                                                                                         acaTGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCcgc           >  1:46915/1‑140 (MQ=255)

                                                                                                                            tGCGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCCGCGGc        <  2:440452/140‑1 (MQ=255)

                                                                                                                              cGGCATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCCGCGGcaa      >  2:873569/1‑140 (MQ=255)

                                                                                                                                 cATAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCCGCGGcaacaa   <  1:116250/140‑1 (MQ=255)

                                                                                                                                  aTAATCGCCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCCGCGGCaacaaa  <  1:1311905/140‑1 (MQ=255)

CGCCAGATTGACAAAACCGGCAATAGTCATGGCGATAGCCACATCCCATTTGGTGGCGGAATAACGTTGTTGACGCGAACCGCCATGTAAATGCTGAGTGAGCGAGGAGTGCAAATAAATCACATGCGGCATAATCGTCGCCCCTAACACGCCTGCTGCCAGGAAGACCGCTTCCGAAGTAGGTAAACTCGGGATCACCATTCCTTTACCCAGCTGCGCCAGGTTAGGCTGGGAGAAAATCAACTCGACAATGTAAGCCGCGGCAACAAA  >  NC_000913/2511951‑2512220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A