Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	116	98.7	3298914	99.2%	3272522	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,193,857	A→G	T332A (ACG→GCG)	yqiK →	protein YqiK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,193,857	0	A	G	100.0%	296.1 / NA	78	T332A (ACG→GCG)	yqiK	protein YqiK
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/36); total (42/36)

AATTCTGGCTGAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGACGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGATCGTG  >  NC_000913/3193721‑3193992

aaTTCTGGCTGAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGa                                                                                                                                      >  1:65394/1‑140 (MQ=255)

aaTTCTGGCTGAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGa                                                                                                                                      >  1:975400/1‑140 (MQ=255)

aaTTCTGGCTGAACAACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGa                                                                                                                                      >  1:1014536/1‑140 (MQ=255)

  ttCTGGCTGAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGaaa                                                                                                                                    >  2:1338725/1‑140 (MQ=255)

     tGGCTGAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAatcg                                                                                                                                 >  2:517432/1‑140 (MQ=255)

       gCTGAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAatcgat                                                                                                                               >  2:1538502/1‑140 (MQ=255)

          gAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGc                                                                                                                            >  1:1093937/1‑140 (MQ=255)

           aaCGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCt                                                                                                                           >  2:1299357/1‑140 (MQ=255)

           aaCGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCt                                                                                                                           >  2:492506/1‑140 (MQ=255)

            aCGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTa                                                                                                                          >  1:90326/1‑140 (MQ=255)

                   aTTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTgccgc                                                                                                                   >  2:191050/1‑140 (MQ=255)

                    ttCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTgccgcc                                                                                                                  <  1:383256/140‑1 (MQ=255)

                           aaCAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCGGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCgg                                                                                                           <  2:226576/140‑1 (MQ=255)

                           aaCAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCgg                                                                                                           <  2:208631/140‑1 (MQ=255)

                             cAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGaa                                                                                                         >  1:855508/1‑140 (MQ=255)

                              aGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGaac                                                                                                        >  1:497018/1‑140 (MQ=255)

                              aGAAATCGACCGCGAACAGGCCGTCCGCTCAAG‑AAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGaaca                                                                                                       >  1:309971/1‑140 (MQ=255)

                                aaaTCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGaacaa                                                                                                      <  1:1437917/140‑1 (MQ=255)

                                aaaTCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGaacaa                                                                                                      <  2:1249516/140‑1 (MQ=255)

                                aaaTCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGaacaa                                                                                                      <  2:1129729/140‑1 (MQ=255)

                                     gACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTc                                                                                                 <  2:1306227/140‑1 (MQ=255)

                                     gACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTc                                                                                                 <  2:1028484/140‑1 (MQ=255)

                                     gACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTc                                                                                                 <  1:394231/140‑1 (MQ=255)

                                     gACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTc                                                                                                 <  1:1333514/140‑1 (MQ=255)

                                     gACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGACGCCAAATCGGAACAACAGTc                                                                                                 <  2:1199704/140‑1 (MQ=255)

                                     gACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTACCGCCAAATCGGAACAACAGTc                                                                                                 <  2:1111329/140‑1 (MQ=255)

                                      aCCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTcc                                                                                                >  2:376476/1‑140 (MQ=255)

                                          cgAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAgg                                                                                            >  1:123466/1‑140 (MQ=255)

                                                 gCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAgc                                                                                     >  1:1586499/1‑140 (MQ=255)

                                                 gCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAgc                                                                                     >  2:798282/1‑140 (MQ=255)

                                                     tCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGt                                                                                 >  1:144491/1‑140 (MQ=255)

                                                      ccGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTg                                                                                >  2:233471/1‑140 (MQ=255)

                                                      ccGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTg                                                                                <  1:1538502/140‑1 (MQ=255)

                                                       cGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGc                                                                               <  1:517432/140‑1 (MQ=255)

                                                       cGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGc                                                                               <  2:790188/140‑1 (MQ=255)

                                                         cTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAGCAACAGTCCCAGGCAGAAGCGCGTGCTa                                                                             >  1:238823/1‑140 (MQ=255)

                                                         cTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTa                                                                             >  1:777891/1‑140 (MQ=255)

                                                           cAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAAt                                                                           >  1:180140/1‑140 (MQ=255)

                                                           cAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAAt                                                                           >  2:446774/1‑140 (MQ=255)

                                                              gAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAAtctc                                                                        <  1:1299357/140‑1 (MQ=255)

                                                                   gTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACt                                                                   <  1:435024/140‑1 (MQ=255)

                                                                       aaGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCa                                                               <  1:173889/140‑1 (MQ=255)

                                                                       aaGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCa                                                               <  1:1562716/140‑1 (MQ=255)

                                                                         gCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGa                                                             <  2:65394/140‑1 (MQ=255)

                                                                          cTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGaa                                                            <  2:1014536/140‑1 (MQ=255)

                                                                            gAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGc                                                          >  1:1352263/1‑140 (MQ=255)

                                                                             aaCGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCg                                                         >  2:1566925/1‑140 (MQ=255)

                                                                             aaCGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCg                                                         >  2:1631119/1‑140 (MQ=255)

                                                                             aaCGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCg                                                         >  2:1160921/1‑140 (MQ=255)

                                                                             aaCGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCg                                                         >  1:938600/1‑140 (MQ=255)

                                                                              aCGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCgg                                                        >  1:1441988/1‑140 (MQ=255)

                                                                               cGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGt                                                       <  1:979688/140‑1 (MQ=255)

                                                                                 tGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTaa                                                     <  1:520155/140‑1 (MQ=255)

                                                                                 tGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTaa                                                     <  2:557006/140‑1 (MQ=255)

                                                                                      ttCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGcc                                                >  1:539359/1‑140 (MQ=255)

                                                                                      ttCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGcc                                                <  2:83572/140‑1 (MQ=255)

                                                                                          cATTAAAGAGATCGAACGGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCcaac                                            >  1:965310/1‑140 (MQ=255)

                                                                                          cATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCcaac                                            >  1:1019304/1‑140 (MQ=255)

                                                                                            ttAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCcaacaa                                          <  1:1018312/140‑1 (MQ=255)

                                                                                              aaaGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACaaaa                                        >  2:1473973/1‑140 (MQ=255)

                                                                                                    aTCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGa                                  >  2:336359/1‑140 (MQ=255)

                                                                                                        aaCAGCAGCAGGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAAcc                              <  2:575108/140‑1 (MQ=255)

                                                                                                           agcagcagGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACt                           <  2:1093937/140‑1 (MQ=255)

                                                                                                                 agGTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAg                     <  2:123466/140‑1 (MQ=255)

                                                                                                                  ggTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGa                    <  2:1558459/140‑1 (MQ=255)

                                                                                                                  ggTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGa                    >  1:917275/1‑140 (MQ=255)

                                                                                                                  ggTCACCGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGa                    >  1:1099995/1‑140 (MQ=255)

                                                                                                                       ccGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGcc               >  1:1278001/1‑140 (MQ=255)

                                                                                                                       ccGAAATCGCTAACCAGGCGAAAGCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCGACAAAACGTAGCAACCACTCGCCAGACTGcc               >  2:1616326/1‑140 (MQ=255)

                                                                                                                        cGAAATCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCg              >  1:1070299/1‑140 (MQ=255)

                                                                                                                             tCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGcc         >  2:178209/1‑140 (MQ=255)

                                                                                                                             tCGCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGcc         >  2:565713/1‑140 (MQ=255)

                                                                                                                               gCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGa       <  1:644964/140‑1 (MQ=255)

                                                                                                                               gCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGa       <  1:1566925/140‑1 (MQ=255)

                                                                                                                               gCTAACCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGa       <  1:492506/140‑1 (MQ=255)

                                                                                                                                  aaCCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGATCg    <  1:191050/140‑1 (MQ=255)

                                                                                                                                  aaCCAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGATCg    <  1:924253/140‑1 (MQ=255)

                                                                                                                                    ccAGGCGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGATCGTg  <  2:975400/140‑1 (MQ=255)

AATTCTGGCTGAACGACAGATTCAGGAAACAGAAATCGACCGCGAACAGGCCGTCCGCTCAAGAAAGGTTGAAGCTGAACGTGAAGTTCGCATTAAAGAGATCGAACAGCAGCAGGTCACCGAAATCGCTAACCAGACGAAATCGATCGCTATTGCCGCCAAATCGGAACAACAGTCCCAGGCAGAAGCGCGTGCTAATCTCGCACTTGCAGAAGCGGTAAGCGCCCAACAAAACGTAGAAACCACTCGCCAGACTGCCGAAGCCGATCGTG  >  NC_000913/3193721‑3193992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A