Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	116	98.7	3298914	99.2%	3272522	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,865,102	A→G	V391A (GTG→GCG)	yidE ←	putative transport protein YidE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,865,102	0	A	G	100.0%	317.4 / NA	85	V391A (GTG→GCG)	yidE	putative transport protein YidE
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (40/45); total (40/45)

CCGCAGCGCGAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCCCA  >  NC_000913/3864969‑3865237

ccGCAGCGCGAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGa                                                                                                                                   >  2:1181115/1‑140 (MQ=255)

ccGCAGCGCGAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGa                                                                                                                                   >  1:1017094/1‑140 (MQ=255)

ccGCAGCGCGAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGa                                                                                                                                   >  2:70180/1‑140 (MQ=255)

ccGCAGCGCGAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGa                                                                                                                                   <  1:1295639/140‑1 (MQ=255)

  gCAGCGCGAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACg                                                                                                                                 >  1:1585346/1‑140 (MQ=255)

      gggggggTGGGCGCTG‑GGCGGCAAAACCCAGTACAGCTTGCCGATCCTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGaa                                                                                                                             <  2:1634975/135‑1 (MQ=255)

      cgcgAGGTTGGCGCTT‑GGCGGCAAAAACCAGAACAGCTTGCCGATCCGGCCGTTGCCCCCGGGAAACAACGCCAAAACCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGaa                                                                                                                             <  2:109793/140‑1 (MQ=255)

       gcgAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAAt                                                                                                                            >  1:365590/1‑140 (MQ=255)

        gggggTTGG‑GCTTGGGCGGCATAACCCAGTCCAGCTTGCCGATCCTGCCGATACGCCCGAGGATCAACGCCATAATCGGCGGCCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATa                                                                                                                           <  2:1502263/137‑1 (MQ=255)

        cgAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATa                                                                                                                           >  2:805128/1‑140 (MQ=255)

         ggggTTGGCGCTG‑GGCGGCATAACCCAGTCCAGCTGCCCGATCCTGCCGATACGCCCGAGGACCACCGCCATAATCGGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAg                                                                                                                          <  2:1111621/138‑1 (MQ=255)

           ggTTGGCGCTG‑GGCGGCATAAACCAGTCCAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGCCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGaa                                                                                                                        <  2:661835/140‑1 (MQ=255)

              tGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCt                                                                                                                     <  1:1069365/140‑1 (MQ=255)

              gggCGCTG‑GGCGGCATAACCCAGTACAGCTTGCCGATCCTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCt                                                                                                                     <  1:1599719/139‑1 (MQ=255)

               ggCGCTG‑GGCGGCATAACCCAGTACAGCTTGCCGATCCTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTa                                                                                                                    <  2:1235328/140‑1 (MQ=255)

                gcgcTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTaa                                                                                                                   >  1:895469/1‑140 (MQ=255)

                 cgcTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAAc                                                                                                                  >  2:1213286/1‑140 (MQ=255)

                    ctgggcggcAAAACCCAGTACAGCTTGCCGATCCTGCCGATCCGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACaa                                                                                                                <  2:225073/137‑1 (MQ=255)

                     t‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATa                                                                                                              >  2:1121111/1‑140 (MQ=255)

                     t‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGAAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATa                                                                                                              >  1:854625/1‑140 (MQ=255)

                       ggcggcATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATAc                                                                                                             >  1:482010/1‑140 (MQ=255)

                        gcggcATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACg                                                                                                            >  1:1253611/1‑140 (MQ=255)

                          ggcATAACCCAGTCCAGCTGGCCGATCCTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGcc                                                                                                          <  2:158121/140‑1 (MQ=255)

                                  ccAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGCCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGa                                                                                                  <  2:343898/140‑1 (MQ=255)

                                  ccAGTACACCTTGCCGATCCTGCCGATCCGCCGGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGa                                                                                                  <  2:1247892/140‑1 (MQ=255)

                                   cAGTACGGCTTGCCGATCCTGCGGATACGCCCGGGGATCAACGCCATAATCAGCGGCCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGAt                                                                                                 <  2:1393325/140‑1 (MQ=255)

                                   cAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGAt                                                                                                 <  1:345534/140‑1 (MQ=255)

                                      tACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGcc                                                                                              >  1:1199018/1‑140 (MQ=255)

                                        cAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGTGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCaa                                                                                            >  2:94663/1‑140 (MQ=255)

                                        cAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCaa                                                                                            <  2:559152/140‑1 (MQ=255)

                                        cAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCaa                                                                                            >  1:969025/1‑140 (MQ=255)

                                           cTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATGCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGGCAATaa                                                                                         >  2:1191182/1‑140 (MQ=255)

                                           cTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATaa                                                                                         >  1:631772/1‑140 (MQ=255)

                                           cTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATaa                                                                                         >  2:1548758/1‑140 (MQ=255)

                                           cTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATaa                                                                                         >  1:1289615/1‑140 (MQ=255)

                                           cTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATaa                                                                                         >  2:881057/1‑140 (MQ=255)

                                             tgccgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAac                                                                                       >  2:1440148/1‑140 (MQ=255)

                                             tgccgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAac                                                                                       >  1:440747/1‑140 (MQ=255)

                                              gccgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAaca                                                                                      <  1:1213286/140‑1 (MQ=255)

                                               ccgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAacac                                                                                     >  2:36539/1‑140 (MQ=255)

                                                cgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACt                                                                                    >  1:1117432/1‑140 (MQ=255)

                                                cgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACACCTAACCCAATGCCAATAAacacg                                                                                    >  2:921619/1‑139 (MQ=255)

                                                    ccggccgatacGCCCGAGGATCAACGCCATAATCAGCGGCCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGgca                                                                                <  1:1177206/137‑1 (MQ=255)

                                                    actgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGgca                                                                                <  2:1310398/140‑1 (MQ=255)

                                                      tgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGgcagc                                                                              >  1:347665/1‑140 (MQ=255)

                                                       gccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGgcagca                                                                             >  2:380652/1‑140 (MQ=255)

                                                       gccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGgcagca                                                                             >  2:400036/1‑140 (MQ=255)

                                                        ccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCAt                                                                            >  1:1597176/1‑140 (MQ=255)

                                                        ccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCAt                                                                            >  1:302873/1‑140 (MQ=255)

                                                        ccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCAt                                                                            >  1:1608667/1‑140 (MQ=255)

                                                              cGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAAc                                                                      <  1:1564996/140‑1 (MQ=255)

                                                                           aCGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGtttt                                                         >  1:1489153/1‑140 (MQ=255)

                                                                           aCGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGtttt                                                         >  2:1405492/1‑140 (MQ=255)

                                                                           aCGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGtttt                                                         >  1:49698/1‑140 (MQ=255)

                                                                             gCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTtg                                                       <  1:957001/140‑1 (MQ=255)

                                                                                  aaccAGGGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTgcg                                                  <  2:1214141/137‑1 (MQ=255)

                                                                                  aaccAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTgcg                                                  <  1:1542178/137‑1 (MQ=255)

                                                                                  aaTCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTgcg                                                  <  2:1623479/140‑1 (MQ=255)

                                                                                  aaTAAGCGGCCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTgcg                                                  <  2:1214399/140‑1 (MQ=255)

                                                                                    ccAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCa                                                <  2:604684/139‑1 (MQ=255)

                                                                                    ccAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCa                                                <  2:1611016/139‑1 (MQ=255)

                                                                                    ccAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCa                                                <  1:58291/139‑1 (MQ=255)

                                                                                      aGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCAtt                                              >  1:758215/1‑140 (MQ=255)

                                                                                           tCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCa                                         >  1:771268/1‑140 (MQ=255)

                                                                                            ccgcccgcCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAg                                        <  2:1180939/140‑1 (MQ=255)

                                                                                             cgcccgccAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGc                                       >  2:1046257/1‑140 (MQ=255)

                                                                                              gcccgccAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGca                                      >  1:13108/1‑140 (MQ=255)

                                                                                                ccgccAGCCCCAGTTACAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGcaca                                    <  1:916521/140‑1 (MQ=255)

                                                                                                     aGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGc                               >  1:821323/1‑140 (MQ=255)

                                                                                                     aGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGc                               <  1:1223264/140‑1 (MQ=255)

                                                                                                      gCCCCAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCa                              <  1:36539/140‑1 (MQ=255)

                                                                                                        cccAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGTGCATTCCCCAGCACATTGGCAAc                            <  2:302873/140‑1 (MQ=255)

                                                                                                        cccAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAAc                            <  1:1082354/140‑1 (MQ=255)

                                                                                                        cccAGTTTCAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAAc                            <  1:881057/140‑1 (MQ=255)

                                                                                                                cAACGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCaa                    <  2:347665/140‑1 (MQ=255)

                                                                                                                  aCGCGGCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAAtt                  >  2:506356/1‑140 (MQ=255)

                                                                                                                      ggCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGcgg              >  2:363527/1‑140 (MQ=255)

                                                                                                                       gCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGcgga             <  1:598448/140‑1 (MQ=255)

                                                                                                                       gCCGGGAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGcgga             >  1:177239/1‑140 (MQ=255)

                                                                                                                           ggAATCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGcggacgga         <  1:178250/140‑1 (MQ=255)

                                                                                                                             aaTCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGgacggacg       <  1:921619/140‑1 (MQ=255)

                                                                                                                             aaTCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGgacggacg       <  2:758215/140‑1 (MQ=255)

                                                                                                                             aaTCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGgacggacg       <  2:1289615/140‑1 (MQ=255)

                                                                                                                             aaTCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGgacggacg       <  1:838703/140‑1 (MQ=255)

                                                                                                                               tCCTGGCGCAAAGACGGGAATAGATCCTAACAATACGCCTAGCCCGATGTCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGcc     <  2:1267360/140‑1 (MQ=255)

                                                                                                                               tCCTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGcc     <  1:1283734/140‑1 (MQ=255)

                                                                                                                                ccTGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGccc    <  2:1117432/140‑1 (MQ=255)

                                                                                                                                 cTGGCGCAAAGACGGTAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGcccc   <  1:819388/140‑1 (MQ=255)

                                                                                                                                  tGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCcca  <  2:631772/140‑1 (MQ=255)

                                                                                                                                  tGGCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCcca  <  1:1121111/140‑1 (MQ=255)

                                                                                                                                  cggCGCAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCcca  <  2:1540498/139‑1 (MQ=255)

CCGCAGCGCGAGGTTGGCGCTT‑GGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCCCA  >  NC_000913/3864969‑3865237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A