Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	120	56.0	1898522	99.4%	1887130	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,391,837	A→G	V6A (GTC→GCC)	ycjY ←	putative hydrolase YcjY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,391,837	0	A	G	100.0%	264.0 / NA	73	V6A (GTC→GCC)	ycjY	putative hydrolase YcjY
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (33/40); total (33/40)

TTCTTTAACGCCCCCACCTGGGTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTAAATGATTAATAGA  >  NC_000913/1391710‑1391973

ttCTTTAACGCCCCCACCTGGGTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATtca                                                                                                                              >  2:493334/1‑140 (MQ=255)

        cGCCCCCACCTGGGTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCg                                                                                                                      <  2:775474/140‑1 (MQ=255)

         gCCCCCACCTGGGTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGt                                                                                                                     <  1:606567/140‑1 (MQ=255)

          cccccACCTGGGTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGtt                                                                                                                    >  1:132330/1‑140 (MQ=255)

          cccccACCTGGGTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGtt                                                                                                                    >  1:779398/1‑140 (MQ=255)

                   gggTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGa                                                                                                           >  2:760214/1‑140 (MQ=255)

                     gTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGt                                                                                                         >  1:901457/1‑140 (MQ=255)

                         gaTAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTc                                                                                                     >  1:309633/1‑140 (MQ=255)

                          aTAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCg                                                                                                    >  1:182911/1‑140 (MQ=255)

                             acacAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGtt                                                                                                 <  2:200275/140‑1 (MQ=255)

                                   ttGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGtttt                                                                                           >  1:802627/1‑140 (MQ=255)

                                      ccTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGTTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAAc                                                                                        >  2:580769/1‑140 (MQ=255)

                                        tGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCGCTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACgg                                                                                      >  2:41463/1‑140 (MQ=255)

                                        tGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACgg                                                                                      <  1:105588/140‑1 (MQ=255)

                                        tGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACgg                                                                                      >  2:457530/1‑140 (MQ=255)

                                           tACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTaa                                                                                         >  1:415989/1‑134 (MQ=255)

                                           tACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTaa                                                                                         <  2:78424/134‑1 (MQ=255)

                                           tACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTaa                                                                                         >  1:78424/1‑134 (MQ=255)

                                           tACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTaa                                                                                         <  2:415989/134‑1 (MQ=255)

                                           tACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTg                                                                                   >  1:431075/1‑140 (MQ=255)

                                           tACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTg                                                                                   >  2:284950/1‑140 (MQ=255)

                                            aCTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTgg                                                                                  <  1:760214/140‑1 (MQ=255)

                                             cTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGt                                                                                 <  1:773181/140‑1 (MQ=255)

                                             cTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGt                                                                                 <  2:901457/140‑1 (MQ=255)

                                             cTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGt                                                                                 <  1:616279/140‑1 (MQ=255)

                                               gACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGa                                                                               <  2:182911/140‑1 (MQ=255)

                                               gACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGa                                                                               <  2:704633/140‑1 (MQ=255)

                                                 cGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGata                                                                             <  1:397282/140‑1 (MQ=255)

                                                 cGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGata                                                                             <  1:141942/140‑1 (MQ=255)

                                                  gggTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGatat                                                                            <  1:731296/140‑1 (MQ=255)

                                                  gggTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGatat                                                                            <  1:493334/140‑1 (MQ=255)

                                                  gggTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGatat                                                                            <  2:925054/140‑1 (MQ=255)

                                                   ggTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATc                                                                           <  1:284950/140‑1 (MQ=255)

                                                    gTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCa                                                                          <  1:917073/140‑1 (MQ=255)

                                                     tttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGatat                                                                            <  1:453224/137‑1 (MQ=255)

                                                     tttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGatat                                                                            >  2:453224/1‑137 (MQ=255)

                                                     tttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGa                                                                               <  1:602831/134‑1 (MQ=255)

                                                     tttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGa                                                                               >  2:602831/1‑134 (MQ=255)

                                                     tttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCAc                                                                         >  1:210718/1‑140 (MQ=255)

                                                     tttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCAc                                                                         >  1:208915/1‑140 (MQ=255)

                                                     tttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCAc                                                                         >  1:943891/1‑140 (MQ=255)

                                                      ttCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACt                                                                        <  1:551176/140‑1 (MQ=255)

                                                       tcatcaAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACta                                                                       <  1:653552/140‑1 (MQ=255)

                                                        catcaAATTTTGGAGGGAAATAGATCGCTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACtat                                                                      <  1:41463/140‑1 (MQ=255)

                                                            aaaTTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGat                                                                  >  1:708889/1‑140 (MQ=255)

                                                               ttttGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATAtt                                                               <  1:834396/140‑1 (MQ=255)

                                                               ttttGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATAtt                                                               <  2:318992/140‑1 (MQ=255)

                                                                            tAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATAtt                                                               >  2:184122/1‑127 (MQ=255)

                                                                            tAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATAtt                                                               <  1:184122/127‑1 (MQ=255)

                                                                               aTCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGAtt                                               <  2:208915/140‑1 (MQ=255)

                                                                                 cACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCa                                                          >  1:423308/1‑127 (MQ=255)

                                                                                 cACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCa                                                          <  2:423308/127‑1 (MQ=255)

                                                                                  aCTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGa                                                             >  2:605522/1‑123 (MQ=255)

                                                                                  aCTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGa                                                             <  1:605522/123‑1 (MQ=255)

                                                                                   cTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGTTATCACTATAGATATTGATCATTAAGTTGATTAGAc                                           >  1:159360/1‑140 (MQ=255)

                                                                                   cTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGAc                                           >  1:115968/1‑140 (MQ=255)

                                                                                   cTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGAc                                           >  2:478963/1‑140 (MQ=255)

                                                                                   cTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGAc                                           >  1:655229/1‑140 (MQ=255)

                                                                                   cTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGAc                                           >  1:643655/1‑140 (MQ=255)

                                                                                   cTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGAc                                           >  1:323309/1‑140 (MQ=255)

                                                                                      cAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCa                                        <  2:210718/140‑1 (MQ=255)

                                                                                         aCAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCaaaa                                     >  1:138144/1‑140 (MQ=255)

                                                                                          cAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAAt                                    <  2:21517/140‑1 (MQ=255)

                                                                                                gaTGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGAt                              <  2:335314/140‑1 (MQ=255)

                                                                                                gaTGGTTGGATTATTGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGAt                              <  2:567966/140‑1 (MQ=255)

                                                                                                           tattGCTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCa                   <  1:478963/140‑1 (MQ=255)

                                                                                                                cTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTaa              <  2:309633/140‑1 (MQ=255)

                                                                                                                cTGTTAGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTaa              <  2:138144/140‑1 (MQ=255)

                                                                                                                     aGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTAAATGAt         <  1:939055/140‑1 (MQ=255)

                                                                                                                     aGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTAAATGAt         >  1:717029/1‑140 (MQ=255)

                                                                                                                     aGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTAAATGAt         <  2:717029/140‑1 (MQ=255)

                                                                                                                     aGTGAAGCTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTAAATGAt         >  2:939055/1‑140 (MQ=255)

                                                                                                                            cTGGCTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTAAATGATTAATAGa  <  1:457530/140‑1 (MQ=255)

TTCTTTAACGCCCCCACCTGGGTGAGATAACACAATTGCCTGATACTGACGGGTTTCATCAAATTTTGGAGGGAAATAGATCACTGCAGACAAAGAGATGGTTGGATTATTGCTGTTAGTGAAGCTGACTTTATTATTCATCATTCCGTTCCTCATGGAGTTGTCGGTTCGTTTTAACGGTTGGTGATATCACTATAGATATTGATCATTAAGTTGATTAGACCCAAAATCATGATTAGACCTATCATTTAAATGATTAATAGA  >  NC_000913/1391710‑1391973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A