Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 120 56.0 1898522 99.4% 1887130 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,628,934 G→A D195N (GAT→AAT)  ydfH → DNA‑binding transcriptional repressor YdfH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,628,9340GA100.0% 233.3 / NA 65D195N (GAT→AAT) ydfHDNA‑binding transcriptional repressor YdfH
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (33/32);  total (33/32)

GTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGA  >  NC_000913/1628797‑1629069
                                                                                                                                         |                                                                                                                                       
gTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAAt                                                                                                                                       >  1:623409/1‑140 (MQ=255)
  cAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATgg                                                                                                                                     <  2:775845/140‑1 (MQ=255)
    aCTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCg                                                                                                                                   <  2:926491/140‑1 (MQ=255)
      tGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGAt                                                                                                                                 <  1:176804/140‑1 (MQ=255)
              gATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGa                                                                                                                         <  2:845438/140‑1 (MQ=255)
                        agaACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATg                                                                                                               >  1:796763/1‑140 (MQ=255)
                        agaACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATg                                                                                                               >  1:738322/1‑140 (MQ=255)
                        agaACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATg                                                                                                               >  1:735905/1‑140 (MQ=255)
                         gaACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCaa                                                                                                                 <  1:655017/137‑1 (MQ=255)
                         gaACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCaa                                                                                                                 >  2:655017/1‑137 (MQ=255)
                          aaCCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGAc                                                                                                             >  1:121740/1‑140 (MQ=255)
                          aaCCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGAc                                                                                                             <  1:267230/140‑1 (MQ=255)
                             cTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCa                                                                                                          >  2:653692/1‑140 (MQ=255)
                             cTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCCGCAAAAACGTAATGGCGATGCGGTAGa                                                                                                                         >  2:944780/1‑125 (MQ=255)
                             cTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCCGCAAAAACGTAATGGCGATGCGGTAGa                                                                                                                         <  1:944780/125‑1 (MQ=255)
                               gAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAAc                                                                                                        >  1:251692/1‑140 (MQ=255)
                                           tGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGaaa                                                                                            <  1:890116/140‑1 (MQ=255)
                                                 cgTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAGCGTGCAATGACGCAACATTTGCAGGAAATCAGCg                                                                                      >  2:189545/1‑140 (MQ=255)
                                                     cgcTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATc                                                                                  >  2:714657/1‑140 (MQ=255)
                                                       cTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCg                                                                                <  1:531537/140‑1 (MQ=255)
                                                       cTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCg                                                                                <  2:24062/140‑1 (MQ=255)
                                                          tatGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCg                                                                                >  2:907694/1‑137 (MQ=255)
                                                          tatGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCg                                                                                <  1:907694/137‑1 (MQ=255)
                                                                  tCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATc                                                                     >  1:411358/1‑140 (MQ=255)
                                                                  tCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATc                                                                     <  2:623409/140‑1 (MQ=255)
                                                                    gACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCg                                                                   >  1:947629/1‑140 (MQ=255)
                                                                     aCCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGc                                                                  <  1:714657/140‑1 (MQ=255)
                                                                     aCCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGc                                                                  >  1:494492/1‑140 (MQ=255)
                                                                                  accaGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCg                                                     >  1:864465/1‑140 (MQ=255)
                                                                                   ccaGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAGCGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGa                                                    <  1:189545/140‑1 (MQ=255)
                                                                                    caGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGAc                                                   <  1:477158/140‑1 (MQ=255)
                                                                                    caGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGAc                                                   <  1:697131/140‑1 (MQ=255)
                                                                                    caGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGAc                                                   <  1:653692/140‑1 (MQ=255)
                                                                                      gAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTg                                                 >  1:435075/1‑140 (MQ=255)
                                                                                      gAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTg                                                 >  2:111739/1‑140 (MQ=255)
                                                                                           gCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTa                                            >  1:742244/1‑140 (MQ=255)
                                                                                              gTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCg                                         <  1:942028/140‑1 (MQ=255)
                                                                                               ttACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGa                                                    <  2:107973/128‑1 (MQ=255)
                                                                                               ttACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGa                                                    >  1:107973/1‑128 (MQ=255)
                                                                                                 aCGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAag                                      >  1:99469/1‑140 (MQ=255)
                                                                                                    ccAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGa                                                    <  2:582418/123‑1 (MQ=255)
                                                                                                    ccAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGa                                                    >  1:582418/1‑123 (MQ=255)
                                                                                                    ccAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGt                                   <  1:376775/140‑1 (MQ=255)
                                                                                                      aGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTaa                                 <  2:99469/140‑1 (MQ=255)
                                                                                                        cATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGaa                                       <  2:535663/132‑1 (MQ=255)
                                                                                                        cATCTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGaa                                       >  1:535663/1‑132 (MQ=255)
                                                                                                           cTTGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCAt                            <  2:947629/140‑1 (MQ=255)
                                                                                                             tGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCAttt                          <  2:864465/140‑1 (MQ=255)
                                                                                                             tGATATTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCAttt                          >  2:804077/1‑140 (MQ=255)
                                                                                                                tatTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCct                       <  2:121740/140‑1 (MQ=255)
                                                                                                                 atTTTCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCctc                      >  2:226916/1‑140 (MQ=255)
                                                                                                                   tttCTCTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCtctc                    >  2:833325/1‑140 (MQ=255)
                                                                                                                     tctcTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCAttt                          >  1:191484/1‑132 (MQ=255)
                                                                                                                     tctcTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCAttt                          <  2:191484/132‑1 (MQ=255)
                                                                                                                     tctcTGCCCTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTcat                  <  2:494492/140‑1 (MQ=255)
                                                                                                                           cccTGCAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTcatcccatc            <  2:735905/140‑1 (MQ=255)
                                                                                                                                cAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTcatccca              <  1:894551/133‑1 (MQ=255)
                                                                                                                                cAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTcatccca              >  2:894551/1‑133 (MQ=255)
                                                                                                                                cAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCgggg       >  1:689630/1‑140 (MQ=255)
                                                                                                                                cAAAAACGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCgggg       >  1:191249/1‑140 (MQ=255)
                                                                                                                                 aaaaaCGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGt      <  2:191249/140‑1 (MQ=255)
                                                                                                                                     aCGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTcat                  >  1:53934/1‑124 (MQ=255)
                                                                                                                                     aCGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTcat                  <  2:53934/124‑1 (MQ=255)
                                                                                                                                     aCGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTgaga  >  2:731607/1‑140 (MQ=255)
                                                                                                                                     aCGTAATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTgaga  >  1:257615/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GTCAACTGGCGTGGGATACCATTGAGAACCTGAAAGCGACCGTTGATCGCGTGCGCTATATGAGTTTCGACCACGTTTCTCCACCAGAAATGCTGTTACGCCAGCATCTTGATATTTTCTCTGCCCTGCAAAAACGTGATGGCGATGCGGTAGAACGTGCAATGACGCAACATTTGCAGGAAATCAGCGAATCCGTGCGCCAGATCCGCCAGGAAAACAGCGACTGGTTTAGCGAAGAGTAATTCATTTCCTCTCATCCCATCCGGGGTGAGA  >  NC_000913/1628797‑1629069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A