Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
106 |
90.3 |
3060316 |
99.2% |
3035833 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,171,781 |
T→C |
intergenic (‑54/+52) |
gatR ← / ← gatD |
DNA‑binding transcriptional repressor GatR, N‑terminal fragment/galactitol‑1‑phosphate 5‑dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,171,781 | 0 | T | C | 98.7%
| 278.8
/ ‑3.8
| 74 | intergenic (‑54/+52) | gatR/gatD | DNA‑binding transcriptional repressor GatR, N‑terminal fragment/galactitol‑1‑phosphate 5‑dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (45/28); minor base A (0/1); total (45/29) |
| Fisher's exact test for biased strand distribution p-value = 3.92e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.82e-01 |
CCGCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACG > NC_000913/2171649‑2171916
|
ccGCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGAt > 1:1049744/1‑140 (MQ=255)
ccGCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGAt < 1:727138/140‑1 (MQ=255)
ccGCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGAt < 1:385239/140‑1 (MQ=255)
ccGCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGAt > 2:524966/1‑140 (MQ=255)
cGCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTACCCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGAGAATGAt < 1:1025103/140‑1 (MQ=255)
gCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCt > 2:573456/1‑140 (MQ=255)
aGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGtt < 1:433404/140‑1 (MQ=255)
aGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGtt < 2:287552/140‑1 (MQ=255)
aGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGAATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTT‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGtt < 2:17775/140‑1 (MQ=255)
aTCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGtttt > 1:333946/1‑140 (MQ=255)
cTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGca < 1:571711/140‑1 (MQ=255)
cTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGca > 2:1508944/1‑140 (MQ=255)
cTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGca < 2:252836/140‑1 (MQ=255)
aaGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATAc < 1:664603/140‑1 (MQ=255)
aaGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATAc < 1:573456/140‑1 (MQ=255)
gCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCg > 2:206565/1‑140 (MQ=255)
gCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCg > 2:1101228/1‑140 (MQ=255)
gCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCg > 1:826775/1‑140 (MQ=255)
cACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCgg > 1:1096177/1‑140 (MQ=255)
cGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGc < 1:1334315/140‑1 (MQ=255)
cGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGc < 1:906112/140‑1 (MQ=255)
cGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGc < 1:1506300/140‑1 (MQ=255)
gTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCa > 2:941016/1‑140 (MQ=255)
gTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCa > 1:538468/1‑140 (MQ=255)
gTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCa > 1:1278044/1‑140 (MQ=255)
cccTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCa < 1:1101228/140‑1 (MQ=255)
tGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCa > 1:961516/1‑140 (MQ=255)
attcaCTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTg > 2:1310599/1‑140 (MQ=255)
attcaCTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTg > 2:1508415/1‑140 (MQ=255)
aaTTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCcgcg > 2:630053/1‑140 (MQ=255)
aaTTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCcgcg < 2:1089922/140‑1 (MQ=255)
aaTTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCcgcg < 2:1078287/140‑1 (MQ=255)
aaTTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATGCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCcgcg > 2:1116058/1‑140 (MQ=255)
atCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAggg > 1:161145/1‑140 (MQ=255)
tATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCcg < 1:702399/125‑1 (MQ=255)
tATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCcg > 2:702399/1‑125 (MQ=255)
tCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAaca > 2:968313/1‑140 (MQ=255)
tCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAaca > 2:841933/1‑140 (MQ=255)
tCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAaca > 2:399816/1‑140 (MQ=255)
tCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAaca > 1:272494/1‑140 (MQ=255)
cGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAacac > 2:1303984/1‑140 (MQ=255)
cGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAacac > 2:445348/1‑140 (MQ=255)
cGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGATTCAGGGAATGAGCAacac > 2:313865/1‑140 (MQ=255)
aatTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGc < 2:826775/140‑1 (MQ=255)
tCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATa < 1:206565/140‑1 (MQ=255)
aTTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACg > 1:697723/1‑140 (MQ=255)
aTTTA‑CCCATATTCAATCGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACg < 2:1049744/140‑1 (MQ=255)
ttA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAg < 2:961516/140‑1 (MQ=255)
ttA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAg < 1:126182/140‑1 (MQ=255)
a‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCg < 2:697723/140‑1 (MQ=255)
tatTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGTCCGGCATAGCATTACGAGCGATGTc > 1:1198403/1‑140 (MQ=255)
tatTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTc > 1:1089637/1‑140 (MQ=255)
tatTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTc > 2:302431/1‑140 (MQ=255)
tatTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTc > 1:1272628/1‑140 (MQ=255)
atTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCa > 2:1497172/1‑140 (MQ=255)
tCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACg < 2:1278044/140‑1 (MQ=255)
tgGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGTCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGcc > 1:1526355/1‑140 (MQ=255)
tgGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGcc > 2:1089834/1‑140 (MQ=255)
tgGCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGcc > 2:1255002/1‑140 (MQ=255)
ggCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCt > 2:1529133/1‑140 (MQ=255)
ggCTAGTGTAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCt > 2:642421/1‑140 (MQ=255)
tgtAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGa < 1:630053/140‑1 (MQ=255)
tgtAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGa > 1:732098/1‑140 (MQ=255)
tgtAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGa > 2:1402684/1‑140 (MQ=255)
tgtAAACGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGa > 2:1141996/1‑140 (MQ=255)
aCGAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCtt > 2:598601/1‑140 (MQ=255)
gAAGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTc < 1:524966/140‑1 (MQ=255)
aGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCaa < 1:399816/140‑1 (MQ=255)
aGGGGGACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCaa > 1:341702/1‑140 (MQ=255)
gggggACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCaaa > 1:1133385/1‑140 (MQ=255)
gggggACCATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCaaa > 1:512936/1‑140 (MQ=255)
cATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCa < 1:841933/140‑1 (MQ=255)
cATTGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCa < 1:922125/140‑1 (MQ=255)
ttGGCGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACg > 1:947014/1‑140 (MQ=255)
|
CCGCCAGATCCTGAACAAGCACGGTTCCCTGTTCATTCACTAATTGGATGATCTTATTCCTTCGCTCGAATGAATTCATCGTCATTTA‑CCCATATTCAATTGTGGCTAGTGTAAACGAAGGGGGACCATTGGTGAATGATCTGTTTTGCACAATACCGGGCCAGCATCACGCTGGCCCGCGGTTTCAGGGAATGAGCAACACTTTGCCCGGCATAGCATTACGAGCGATGTCACGCACCGCCTGGGCGAAGCTTTCAAAGCTTCCACG > NC_000913/2171649‑2171916
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
