Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
106 |
90.3 |
3060316 |
99.2% |
3035833 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,905,219 |
(C)6→7 |
coding (200/672 nt) |
queE ← |
putative 7‑carboxy‑7‑deazaguanine synthase QueE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,905,213 | 1 | . | C | 98.9%
| 333.3
/ ‑3.5
| 89 | coding (206/672 nt) | queE | putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (53/35); total (53/36) |
| Fisher's exact test for biased strand distribution p-value = 4.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 104 total aligned reads displayed.
GCAGCTAAAACCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCATCCCTGTAAACGAATAA > NC_000913/2905074‑2905345
|
gCAGCTAAAACCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑Ag < 1:343656/140‑1 (MQ=255)
aGCTAAAACCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑c < 2:1227907/140‑1 (MQ=255)
tAAAACCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑cccc > 2:87487/1‑140 (MQ=255)
tAAAACCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑cccc < 1:824112/140‑1 (MQ=255)
tAAAACCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑cccc < 1:615979/140‑1 (MQ=255)
aaaaCCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑ccccc < 1:1364927/140‑1 (MQ=255)
aaaCCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑cccccc < 2:815953/140‑2 (MQ=255)
aaaCCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑cccccc < 2:151710/140‑2 (MQ=255)
aaaCCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑cccccc < 2:1113165/140‑2 (MQ=255)
aCCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑c‑ccccccac < 2:739762/140‑4 (MQ=255)
tCTTTTCGAGCAGATCAGTCAGTGGCCGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATc > 1:1457993/1‑140 (MQ=255)
cTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCa < 2:1394776/140‑1 (MQ=255)
ttttCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCAc < 2:196428/140‑1 (MQ=255)
ttttCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACAGGCCGCGCGGTGTAGCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCAc < 2:595662/140‑1 (MQ=255)
ttCGAGCAGATCAGTCAGTGGCAGCAAATCGTGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCActc > 2:1502166/1‑140 (MQ=255)
ttCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCActc > 2:709031/1‑140 (MQ=255)
aGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCtt < 1:1411663/140‑1 (MQ=255)
aGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCtt > 2:1002895/1‑140 (MQ=255)
aGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑C‑CCCCCACTTATCACTCTCTTTGGt < 2:588743/140‑1 (MQ=255)
aTCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTc > 1:983588/1‑140 (MQ=255)
tcagtGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGc > 1:714879/1‑140 (MQ=255)
tcagtGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGc > 2:10312/1‑140 (MQ=255)
agtGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCa < 2:572507/140‑1 (MQ=255)
tGGCAGCAAATCATGAATGCAAGGCTCACCCCCCGTAATCACCGCATGCCGCGCGGTGTATCGCTGGCGACCAATGACAGCCAGCAAAGCTTCACTGCTCGC‑AGC‑C‑CCCCCGCGTATCACTCTCTTTGGTCTTCGCCAGa < 2:382005/140‑1 (MQ=255)
tGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGa > 1:1222345/1‑140 (MQ=255)
ggCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGaa < 1:516701/140‑1 (MQ=255)
ggCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGaa > 2:1108656/1‑140 (MQ=255)
ggCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGaa > 1:963541/1‑140 (MQ=255)
ggCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGCATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGaa > 1:664287/1‑140 (MQ=255)
ggCAGCAAATCATGAATGCAAGGC‑CACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAAt > 1:539149/1‑140 (MQ=255)
gcagcaAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAAt < 2:246311/140‑1 (MQ=255)
cagcaAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGCCC‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAAt > 2:319118/1‑140 (MQ=255)
cagcaAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATg > 2:450622/1‑140 (MQ=255)
cagcaAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATg > 1:770078/1‑140 (MQ=255)
agcaAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGc < 1:615971/140‑1 (MQ=255)
gcaAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCt < 1:724708/140‑1 (MQ=255)
aTCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGaaa < 1:435144/140‑1 (MQ=255)
tCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGaaaa > 2:114664/1‑140 (MQ=255)
tGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAggg < 1:1182851/140‑1 (MQ=255)
gAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGga < 1:92909/140‑1 (MQ=255)
aTGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGgaga < 1:1213947/140‑1 (MQ=255)
aaGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTc > 1:179634/1‑140 (MQ=255)
aaGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTc > 1:779374/1‑140 (MQ=255)
ggCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTccc > 1:1406264/1‑140 (MQ=255)
ggCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAACAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTccc < 1:893703/140‑1 (MQ=255)
gCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCg < 2:1366504/140‑1 (MQ=255)
gCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCg < 2:1457993/140‑1 (MQ=255)
accaccCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATcc > 2:1039208/1‑140 (MQ=255)
gTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCt < 2:1343577/140‑1 (MQ=255)
gTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCt < 2:800882/140‑1 (MQ=255)
tAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCtt > 1:1263555/1‑140 (MQ=255)
caccacATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTcc < 1:1108656/140‑1 (MQ=255)
caccacATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTcc > 2:1052063/1‑140 (MQ=255)
cacaTGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAg > 1:552062/1‑140 (MQ=255)
cacaTGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAg > 1:85972/1‑140 (MQ=255)
cacaTGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAg > 1:1301492/1‑140 (MQ=255)
caTGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGgt < 1:708594/140‑1 (MQ=255)
caTGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGgt < 1:791398/140‑1 (MQ=255)
caTGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGgt < 2:714879/140‑1 (MQ=255)
gCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTGCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAACTTTTCCCAGgcgtg > 1:1029288/1‑140 (MQ=255)
ccGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGgtgtgt > 1:136984/1‑140 (MQ=255)
cgcgcgGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGtt < 1:477157/140‑1 (MQ=255)
gcgGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTgg > 1:328173/1‑140 (MQ=255)
ctCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCa < 2:1148799/139‑1 (MQ=255)
aTCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCa < 2:1239715/140‑1 (MQ=255)
tCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCAc < 2:1222345/140‑1 (MQ=255)
tCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCAc < 1:480328/140‑1 (MQ=255)
tCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCAc < 1:664119/140‑1 (MQ=255)
cccTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCAcc < 1:1438821/140‑1 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGCCC‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGc > 1:573845/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:366246/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:97438/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 2:207441/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 2:355899/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:1451252/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 2:507291/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:1305032/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:129207/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 2:732916/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:418480/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 2:1320600/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:693976/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:774743/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGca > 1:889973/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTG‑AAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGcac > 1:104695/1‑140 (MQ=255)
gCGACCAATGACAGCCAGCAAATCTTCACTCCTCGCAAC‑‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGTAAAGGGCGACTTCCCGATCCTCAAGCTTTTCCCAGGGGTGTTTGGTGTCGCACCAGGca > 2:1391672/1‑140 (MQ=255)
gACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGcaca > 2:1016699/1‑140 (MQ=255)
aCCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAg > 1:101743/1‑140 (MQ=255)
ccAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGc > 1:1143030/1‑140 (MQ=255)
cAATGACAGCCAGCAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGcc > 1:960566/1‑140 (MQ=255)
agccagcAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCggg < 1:1357059/140‑1 (MQ=255)
ccagcAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCa > 2:1081667/1‑140 (MQ=255)
ccagcAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCa > 2:170955/1‑140 (MQ=255)
cagcAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCAt < 1:1428269/140‑1 (MQ=255)
cagcAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCAt < 1:1502166/140‑1 (MQ=255)
cagcAAATCTTCACTGCTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCAt < 2:779374/140‑1 (MQ=255)
tCTTCACTGCTCGC‑TG‑‑CTCCCCCACATATCCCTCTCTTTGGTCTTCGCCAGAAGGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCATCCCTGTa < 2:664287/140‑1 (MQ=255)
cTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCATCCCTGTAAACGAATaa > 1:1277398/1‑140 (MQ=255)
cTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCATCCCTGTAAACGAATaa > 2:787819/1‑140 (MQ=255)
cTCGC‑AGC‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCATCCCTGTAAACGAATaa > 1:459693/1‑140 (MQ=255)
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GCAGCTAAAACCGTTCTTTTCGAGCAGATCAGTCAGTGGCAGCAAATCATGAATGCAAGGCTCACCACCCGTAATCACCACATGCCGCGCGGTGTATCCCTGGCGACCAATGACAGCCAGCAAATCTTCACTGCTCGC‑AG‑‑C‑CCCCCACTTATCACTCTCTTTGGTCTTCGCCAGAATGCTGAAAAGGGAGACTTCCCGATCCTCAAGCTTTTCCCAGGTGTGTTTGGTGTCGCACCAGGCACAGCCAACCGGGCATCCCTGTAAACGAATAA > NC_000913/2905074‑2905345
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
