Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 106 90.3 3060316 99.2% 3035833 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,035,757 A→G G175G (GGT→GGC)  prfB ← peptide chain release factor RF2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,035,7570AG98.4% 207.6 / NA 63G175G (GGT→GGC) prfBpeptide chain release factor RF2
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (31/31);  minor base C (0/1);  total (31/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATAT  >  NC_000913/3035623‑3035890
                                                                                                                                      |                                                                                                                                     
gcgGAGCTGAGGGAGGGGGGGCGACGCCCGCCGGAGTAAACCGGGCTTTTACGCCCGAGGCGGTGAACGCCGTTTTCTGTACACAGCCAGCCGAAAGCGTATTCGCCGGAGATTTTGATCGTCGCGGATTTAATGCCCGc                                                                                                                                  <  2:182039/140‑1 (MQ=255)
    aGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACt                                                                                                                              >  2:322054/1‑140 (MQ=255)
    aGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACt                                                                                                                              >  2:440881/1‑140 (MQ=255)
    aGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACt                                                                                                                              >  1:152671/1‑140 (MQ=255)
     gCTGACCGACGTGGGGCGACGCCCGCCGGAGTAAAACGGGCTTTTCCGCCCCGGTCGGTAAACGCCGGTTTCTGAACGCAGCCAGCCGTAAGCGTAATCGCCGGAAATTTTGATCGTCCCGGATTTAATGCCCGCCACtt                                                                                                                             <  2:367382/140‑1 (MQ=255)
     gCTGAACGAGGTGTGGCGCCGCCCGCCGGAGTCAAACGGGCTTTTACGCCCCGGGCGGTGAACGCCGTTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACtt                                                                                                                             <  2:531443/140‑1 (MQ=255)
       ggAACGCCGTGTGGCGCCGCCCGCCGGAGTCAAACGGGCTTTTACGCCCCGGGCGGTGAACGCCGTTTTCTGTCCGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCa                                                                                                                           <  2:776963/139‑1 (MQ=255)
             gcgTGGGGCGCCGCCCGCCGGAGTCAAACGGGCTTTTACGCCCCGGGGGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTcc                                                                                                                     <  2:871625/139‑1 (MQ=255)
              cgTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCg                                                                                                                    >  2:938410/1‑140 (MQ=255)
              cgTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCg                                                                                                                    >  1:61802/1‑140 (MQ=255)
                tgtgGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGAc                                                                                                                  >  1:657348/1‑140 (MQ=255)
                   gacgacgaCCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGActct                                                                                                               >  1:139190/3‑140 (MQ=255)
                           ccgccgGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCgatgat                                                                                                       >  2:430410/1‑140 (MQ=255)
                             gccgGAGTAAACCGGCTTTTTACGCCCCGGGGGGTGAACGCGGTTTTCTGTCCGCAGCCAGCCGTAGGCGTAATCGCGGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGAttt                                                                                                     <  2:1481666/140‑1 (MQ=255)
                              ccgGAGTCAAACGGGTTTTTACGCCCCGGGCGGTGAACGCCGTTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTc                                                                                                    <  2:1314285/140‑1 (MQ=255)
                              ccgGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTc                                                                                                    >  1:1486846/1‑140 (MQ=255)
                                        aCGGGCTTTTACGCCCCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGaaa                                                                                          <  1:495650/140‑1 (MQ=255)
                                            gCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCAc                                                                                      >  2:1002228/1‑140 (MQ=255)
                                             tttttACGCACCGGGGGGTGACCGCCGTTTTCTGTCCGCACCCAGCCGTAAGCGTAACCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCAcg                                                                                     <  2:863052/139‑1 (MQ=255)
                                                       ccggggggTGAACGCGGTTTTCTGTACGCACCCAGCCGTAAGCGTAATCGCGGGAGTTTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTACAGTTTTGAAACCACGCGATTCTGcc                                                                           <  2:1324953/134‑1 (MQ=255)
                                                       ccgggCGGTGAACGCCGGTTTCTCTGCCCAGCCAGCCGTAAGCGTAATCGCCGGAGTTTTTGAGCGTCCCGTATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGcc                                                                           <  2:1503755/137‑1 (MQ=255)
                                                        cgggCGGTGAACGCCGTTTTTTGTACGCACCCAGCCGAAAGCGTAACCGCCGGAGATTTTGATCGTCACGTATTTAACGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGccc                                                                          <  2:299897/138‑1 (MQ=255)
                                                        cAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGccc                                                                          >  2:183217/1‑140 (MQ=255)
                                                          ggCGGTGACCGCCGTTTTCTGTCCGCAGCCAGCCGTAAGCGTAATCGCCGGAGTTTTTGATCGTCACGGATTTAATGCCCGACACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAg                                                                        <  2:1145854/140‑1 (MQ=255)
                                                          ggCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAg                                                                        >  2:501691/1‑140 (MQ=255)
                                                          ggCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAg                                                                        >  2:1279302/1‑140 (MQ=255)
                                                          ggCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAg                                                                        >  2:1476107/1‑140 (MQ=255)
                                                           ggggTGACCGCGGTTTTCTGTACGCACCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAgc                                                                       <  2:613684/138‑1 (MQ=255)
                                                           gCGGTGACCGCGGTTTTCTGTCCGCAGCCGGCCGTAAGCGTAATCGCCGGAGATTTGGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAgc                                                                       <  2:1355748/140‑1 (MQ=255)
                                                              gggAACGCGGGTTTCTGGGCGCAGCCGGCCGGACGCGTAATCGCCGGAGATTTTGTCCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCa                                                                    <  2:1041137/138‑1 (MQ=255)
                                                              gTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCa                                                                    <  1:440881/140‑1 (MQ=255)
                                                                gAACGCCGTTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGa                                                                  <  1:1083278/140‑1 (MQ=255)
                                                                  aCGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGata                                                                >  1:736093/1‑140 (MQ=255)
                                                                  aCGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGata                                                                >  1:1344868/1‑140 (MQ=255)
                                                                  aCGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGata                                                                >  2:1430690/1‑140 (MQ=255)
                                                                   cGCCGGTTTTTGCCCGCGCCCGGCCGTAAGCGTAATCGCGGGAGTTTTTGTTCGTCCCGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGatac                                                               <  2:1052420/140‑1 (MQ=255)
                                                                     ctggTTTTTATCCGCACCCTGCGGAAAGCGTAATCTCCGGAGTTTTTGACCGTCACGGTTTTAATCCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGatacat                                                             <  2:1486846/138‑1 (MQ=255)
                                                                     ccGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGatacat                                                             <  1:143400/140‑1 (MQ=255)
                                                                     ccGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGatacat                                                             <  1:592590/140‑1 (MQ=255)
                                                                     ccGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTAGAAACCACGCGATTCTGCCCAGCGCAGatacat                                                             <  2:675584/140‑1 (MQ=255)
                                                                      cGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGatacata                                                            <  2:1492517/140‑1 (MQ=255)
                                                                      cGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGatacata                                                            >  2:277059/1‑140 (MQ=255)
                                                                        ttttCTGTCCGCAGCCGGCCGTAAGCGTAATCGCCGGAGTTTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACg                                                          <  2:139190/139‑1 (MQ=255)
                                                                        gTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACg                                                          <  1:256117/140‑1 (MQ=255)
                                                                          ttCTGTCCGCAGCCAGCCGTAAGCGTAATCGCCGGAGTTTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCt                                                        <  2:1284754/140‑1 (MQ=255)
                                                                          ttCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCt                                                        <  1:938410/140‑1 (MQ=255)
                                                                             tGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCaa                                                     >  2:1471517/1‑140 (MQ=255)
                                                                              gtccGCAGCCAGCCGTAAGCGTAACCGCCGGAGATTTTGATCGTCACGGTTTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAg                                                    <  1:258287/137‑1 (MQ=255)
                                                                              gTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAg                                                    >  2:34315/1‑140 (MQ=255)
                                                                                   cgcccggccGTAAGCGTAATCGCCGGAGTTTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGc                                               <  2:657348/134‑1 (MQ=255)
                                                                                   cagccagcCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGc                                               <  1:430410/140‑1 (MQ=255)
                                                                                    agccagccGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCt                                              >  2:799232/1‑140 (MQ=255)
                                                                                    agccagccGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCt                                              >  1:1076909/1‑140 (MQ=255)
                                                                                     cccagcgGTAAGCGTAACCGCGGGAGATTTTGATCGTCACGGTTTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTc                                             <  2:1316400/139‑1 (MQ=255)
                                                                                        cgcggTAGGCGTAATCGCCGGAGTTTTTGATCGTCACGGTTTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGcc                                          <  2:391508/136‑1 (MQ=255)
                                                                                         gccGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGccc                                         >  2:854576/1‑140 (MQ=255)
                                                                                               aGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCt                                   >  2:853417/1‑140 (MQ=255)
                                                                                                gCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCtg                                  <  1:410053/140‑1 (MQ=255)
                                                                                                gCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCtg                                  >  1:1197905/1‑140 (MQ=255)
                                                                                                gCGTAACCGCGGGAGATTTTGATCGTCACGGATTTAAAGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCtg                                  <  1:44994/140‑1 (MQ=255)
                                                                                                     aTCGCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCtt                             >  2:775961/1‑140 (MQ=255)
                                                                                                        gCCGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCg                          <  2:1344868/140‑1 (MQ=255)
                                                                                                          cGGAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTa                        >  1:179641/1‑140 (MQ=255)
                                                                                                           ggAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTAc                       >  1:94123/1‑140 (MQ=255)
                                                                                                           ggAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTAc                       >  2:1222386/1‑140 (MQ=255)
                                                                                                           ggAGATTTTGATCGTCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTAc                       >  2:915473/1‑140 (MQ=255)
                                                                                                                         tCACGGATTTAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGcc         >  2:1302218/1‑140 (MQ=255)
                                                                                                                                tttAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAatat  <  1:1476107/140‑1 (MQ=255)
                                                                                                                                tttAATGCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAatat  <  1:1002228/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
GCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGTACCGCCAGACCCCGCCTGAATAT  >  NC_000913/3035623‑3035890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A