Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	106	90.3	3060316	99.2%	3035833	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,138,694	G→A	intergenic (‑172/‑33)	gss ← / → yghU	fused glutathionylspermidine amidase/glutathionylspermidine synthetase/disulfide reductase/organic hydroperoxide reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,138,694	0	G	A	98.8%	289.5 / NA	85	intergenic (‑172/‑33)	gss/yghU	fused glutathionylspermidine amidase/glutathionylspermidine synthetase/disulfide reductase/organic hydroperoxide reductase
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (41/43); minor base T (0/1); total (41/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTGCTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTCCGACG  >  NC_000913/3138557‑3138825

gCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACactact                                                                                                                                   <  2:495076/140‑1 (MQ=255)

    aaTTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCaa                                                                                                                               >  1:1123058/1‑140 (MQ=255)

       tgttgtGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAacac                                                                                                                            <  2:1440359/140‑1 (MQ=255)

          tgtgCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTAc                                                                                                                         <  2:121140/140‑1 (MQ=255)

          tgtgCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTAc                                                                                                                         <  2:1270264/140‑1 (MQ=255)

           gtgCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTAcc                                                                                                                        <  1:121791/140‑1 (MQ=255)

              ctctGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACt                                                                                                                     <  1:952917/140‑1 (MQ=255)

              ctctGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACt                                                                                                                     >  1:388359/1‑140 (MQ=255)

              ctctGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACt                                                                                                                     >  2:217737/1‑140 (MQ=255)

                ctGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCaa                                                                                                                               <  1:823787/128‑1 (MQ=255)

                ctGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCaa                                                                                                                               >  2:823787/1‑128 (MQ=255)

                 tGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCACAATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCa                                                                                                                   <  2:804742/140‑1 (MQ=255)

                  gATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGa                                                                                                                 <  1:1417840/140‑1 (MQ=255)

                   aTTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGaa                                                                                                                <  1:206704/140‑1 (MQ=255)

                     tACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAgg                                                                                                              <  2:260622/140‑1 (MQ=255)

                        cTGCTCAGCGACATTAACCGGACAGAGGTCAGAGTAATCATACGCGTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTGCCACTCAGAAGGCaa                                                                                                           <  2:1273659/140‑1 (MQ=255)

                        cTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCaa                                                                                                           <  2:845355/140‑1 (MQ=255)

                             cAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCAc                                                                                                      >  2:171958/1‑140 (MQ=255)

                                  aCATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGTGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATga                                                                                                 >  2:1412268/1‑140 (MQ=255)

                                  aCATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATga                                                                                                 >  1:1049690/1‑140 (MQ=255)

                                    aTTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATgaca                                                                                               <  2:784421/140‑1 (MQ=255)

                                     ttAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATgacag                                                                                              >  2:1198484/1‑140 (MQ=255)

                                      tAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATgacaga                                                                                             <  2:468187/140‑1 (MQ=255)

                                      tAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATgacaga                                                                                             <  1:87788/140‑1 (MQ=255)

                                      tAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATgacaga                                                                                             <  2:10262/140‑1 (MQ=255)

                                      tAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATgacaga                                                                                             <  2:1061592/140‑1 (MQ=255)

                                             aCAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACt                                                                                      >  2:1004497/1‑140 (MQ=255)

                                              cAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACtt                                                                                     >  2:672292/1‑140 (MQ=255)

                                                gagGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTTCTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTAt                                                                                   <  1:1214852/140‑1 (MQ=255)

                                                gagGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTAt                                                                                   <  1:846244/140‑1 (MQ=255)

                                                 agGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATc                                                                                  >  1:234182/1‑140 (MQ=255)

                                                         cTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCcgcg                                                                          <  1:843026/140‑1 (MQ=255)

                                                           aaTCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGaa                                                                        >  1:1172188/1‑140 (MQ=255)

                                                             tCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAg                                                                      >  2:854881/1‑140 (MQ=255)

                                                               aTACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTc                                                                    <  2:313259/140‑1 (MQ=255)

                                                                  cacCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTgg                                                                 <  2:1024904/140‑1 (MQ=255)

                                                                  cacCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTgg                                                                 >  1:1040148/1‑140 (MQ=255)

                                                                   acCTCATCGCAGCGGCTGGCGCAAAAGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGa                                                                <  1:532820/140‑1 (MQ=255)

                                                                    ccTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGAc                                                               >  1:531618/1‑140 (MQ=255)

                                                                     cTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACg                                                              <  1:1380016/140‑1 (MQ=255)

                                                                     cTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACg                                                              <  1:577207/140‑1 (MQ=255)

                                                                     cTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACg                                                              <  2:692205/140‑1 (MQ=255)

                                                                     cTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACg                                                              <  2:1315578/140‑1 (MQ=255)

                                                                     cTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACg                                                              <  2:1049690/140‑1 (MQ=255)

                                                                      tCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGt                                                             >  2:837161/1‑140 (MQ=255)

                                                                      tCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGt                                                             >  2:1477193/1‑140 (MQ=255)

                                                                       cATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTg                                                            >  1:1301845/1‑140 (MQ=255)

                                                                       cATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTg                                                            >  2:61076/1‑140 (MQ=255)

                                                                       cATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTg                                                            >  1:531184/1‑140 (MQ=255)

                                                                       cATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTg                                                            >  2:1230106/1‑140 (MQ=255)

                                                                        aTCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTgg                                                           >  1:802226/1‑140 (MQ=255)

                                                                        aTCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTgg                                                           >  1:1442270/1‑140 (MQ=255)

                                                                        aTCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTgg                                                           >  1:312254/1‑140 (MQ=255)

                                                                          cGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGa                                                         >  1:898702/1‑140 (MQ=255)

                                                                             aGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATaa                                                      >  1:1171411/1‑140 (MQ=255)

                                                                               cGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAAt                                                    >  1:863009/1‑140 (MQ=255)

                                                                                 gCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATcc                                                  >  2:55631/1‑140 (MQ=255)

                                                                                   tGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTTCCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGc                                                <  2:1181702/140‑1 (MQ=255)

                                                                                       gcAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTggc                                            >  1:328235/1‑140 (MQ=255)

                                                                                              gTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGt                                     <  2:142605/140‑1 (MQ=255)

                                                                                              gTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGt                                     <  1:477812/140‑1 (MQ=255)

                                                                                              gTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGt                                     <  1:1335847/140‑1 (MQ=255)

                                                                                               ttAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGtt                                    <  2:1480044/140‑1 (MQ=255)

                                                                                                 aaaaaaTTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCg                                  <  1:296655/140‑1 (MQ=255)

                                                                                                 aaaaaaTTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCg                                  <  1:217737/140‑1 (MQ=255)

                                                                                                 aaaaaaTTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCg                                  <  1:44470/140‑1 (MQ=255)

                                                                                                  aaaaaTTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGc                                 >  1:461040/1‑140 (MQ=255)

                                                                                                      aTTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAat                             <  1:349430/140‑1 (MQ=255)

                                                                                                       ttCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAata                            >  2:697078/1‑140 (MQ=255)

                                                                                                           c‑aTTCTGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCaa                        <  2:1173446/140‑1 (MQ=255)

                                                                                                                 tGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGcc                   <  1:1004497/140‑1 (MQ=255)

                                                                                                                 tGTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGcc                   <  1:854881/140‑1 (MQ=255)

                                                                                                                  gTACAGCAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGccc                  >  1:1041356/1‑140 (MQ=255)

                                                                                                                        cAAGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTc            >  1:944955/1‑140 (MQ=255)

                                                                                                                         aaGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCt           <  1:837161/140‑1 (MQ=255)

                                                                                                                          aGTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTg          >  1:1507914/1‑140 (MQ=255)

                                                                                                                           gTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTgg         >  1:775086/1‑140 (MQ=255)

                                                                                                                           gTGACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTCCtag         >  2:414192/1‑138 (MQ=255)

                                                                                                                             gACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTc       <  2:399939/140‑1 (MQ=255)

                                                                                                                             gACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTc       >  1:1509511/1‑140 (MQ=255)

                                                                                                                             gACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTc       <  1:171958/140‑1 (MQ=255)

                                                                                                                             gACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTc       >  1:873089/1‑140 (MQ=255)

                                                                                                                             gACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTc       >  1:1274328/1‑140 (MQ=255)

                                                                                                                             gACCTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTc       >  1:742834/1‑140 (MQ=255)

                                                                                                                                cTGCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCACGTTCGCCAATATCAATCGCCCGGTTTCTGGTCCGa    <  2:1442270/140‑1 (MQ=255)

                                                                                                                                  gCTACACTACTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTCCGACg  >  1:335682/1‑140 (MQ=255)

GCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGACTAATCATACACCTCATCGCAGCGGCTGGCGCAAAGGGTTAAAAAATTCAC‑ATTCTGTACAGCAAGTGACCTGCTACACTGCTTCAACACTACCACTCAGAAGGCAACTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCCAATATCAATCGCCCGGTTTCTGGTCCGACG  >  NC_000913/3138557‑3138825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A