Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 106 90.3 3060316 99.2% 3035833 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,260,051 G→A G20G (GGC→GGT)  tdcF ← putative enamine/imine deaminase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,260,0510GA98.6% 215.5 / NA 70G20G (GGC→GGT) tdcFputative enamine/imine deaminase
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (34/34);  total (34/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGCCCGGCAGCAACCACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACGCCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGT  >  NC_000913/3259914‑3260181
                                                                                                                                         |                                                                                                                                  
aGCCCGGCAGCAACCACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACAcc                                                                                                                                  <  2:542408/140‑1 (MQ=255)
 gCCCGGCAGCAACCACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACAccc                                                                                                                                 >  1:882852/1‑140 (MQ=255)
  cccGGCAGCAACCACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCt                                                                                                                                >  1:825533/1‑140 (MQ=255)
   ccGGCAGCAACCACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTg                                                                                                                               <  1:704650/140‑1 (MQ=255)
      gcagcaACCACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGCGAAGACCATGCTGCCTAAATCAACACCCTGAAc                                                                                                                            >  1:189280/1‑140 (MQ=255)
             ccACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAggg                                                                                                                     <  2:851786/140‑1 (MQ=255)
                   tCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGAtt                                                                                                               <  2:653411/140‑1 (MQ=255)
                   tCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGAtt                                                                                                               <  2:551551/140‑1 (MQ=255)
                        ttGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGcc                                                                                                          >  1:1383204/1‑140 (MQ=255)
                              ttttCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGc                                                                                                    <  2:677767/140‑1 (MQ=255)
                                 tCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACg                                                                                                 >  1:36844/1‑140 (MQ=255)
                                 tCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGGATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACg                                                                                                 >  1:1338206/1‑140 (MQ=255)
                                       cTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGt                                                                                           <  2:1010269/140‑1 (MQ=255)
                                          aaaCGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTc                                                                                        >  2:996540/1‑140 (MQ=255)
                                                gcCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAAt                                                                                  <  1:1075328/140‑1 (MQ=255)
                                                    gATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCttt                                                                              <  1:788093/140‑1 (MQ=255)
                                                          gCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGCACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATa                                                                        <  2:1120975/140‑1 (MQ=255)
                                                          gCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATa                                                                        <  1:694958/140‑1 (MQ=255)
                                                            acaTCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACa                                                                      >  1:1238894/1‑140 (MQ=255)
                                                                cAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcct                                                                  >  1:358422/1‑140 (MQ=255)
                                                                cAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcct                                                                  >  2:485314/1‑140 (MQ=255)
                                                                cAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcct                                                                  >  1:711151/1‑140 (MQ=255)
                                                                cAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcct                                                                  >  1:807418/1‑140 (MQ=255)
                                                                cAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcct                                                                  >  1:1397295/1‑140 (MQ=255)
                                                                 aGCCGGGATCTCCCCGGGCTGTGGGCAAACCGGTATTTGCCCGGGGGTGGAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcctc                                                                 <  1:1329849/140‑1 (MQ=255)
                                                                  gCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcctcc                                                                >  2:1448310/1‑140 (MQ=255)
                                                                  gCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACAtcctcc                                                                >  2:709543/1‑140 (MQ=255)
                                                                   ccGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCg                                                               >  2:554162/1‑140 (MQ=255)
                                                                   ccGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGACACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCg                                                               >  2:191499/1‑140 (MQ=255)
                                                                      ggATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCg                                                            >  2:599815/1‑140 (MQ=255)
                                                                         tctcACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACTCCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCa                                                         <  1:946733/140‑1 (MQ=255)
                                                                         tctcACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCa                                                         <  2:507197/140‑1 (MQ=255)
                                                                             aCCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAgc                                                     >  1:1379409/1‑140 (MQ=255)
                                                                               cGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAgcgc                                                   <  2:768453/140‑1 (MQ=255)
                                                                               cGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAgcgc                                                   <  2:1326308/140‑1 (MQ=255)
                                                                               cGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAgcgc                                                   <  2:1355745/140‑1 (MQ=255)
                                                                                ggTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGcc                                                  <  1:1301614/140‑1 (MQ=255)
                                                                                gatCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCGTAAAACAACACCCTGAACAAAATGGCCGACTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGcc                                                  <  2:1037800/138‑1 (MQ=255)
                                                                                 gTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCt                                                 >  1:907258/1‑140 (MQ=255)
                                                                                 gTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCt                                                 <  2:51179/140‑1 (MQ=255)
                                                                                    tgtgGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTggg                                              >  1:168299/1‑140 (MQ=255)
                                                                                    tgtgGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTggg                                              >  2:1165738/1‑140 (MQ=255)
                                                                                    tgtgGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTggg                                              >  2:1303287/1‑140 (MQ=255)
                                                                                    tgtgGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTggg                                              >  1:548422/1‑140 (MQ=255)
                                                                                       gggCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTaa                                           >  2:368029/1‑140 (MQ=255)
                                                                                       gggCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTaa                                           >  1:433773/1‑140 (MQ=255)
                                                                                       gggCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTaa                                           >  2:842515/1‑140 (MQ=255)
                                                                                             aCCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTAc                                     >  2:768614/1‑140 (MQ=255)
                                                                                             aCCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTAc                                     >  1:354152/1‑140 (MQ=255)
                                                                                                ggTATTTGCCCGGAGGTGAAGCCCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTg                                  <  2:863637/140‑1 (MQ=255)
                                                                                                        cccGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACa                          >  1:1015947/1‑140 (MQ=255)
                                                                                                        cccGGAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACa                          <  1:996540/140‑1 (MQ=255)
                                                                                                           ggAGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGACACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATcc                       <  1:191499/140‑1 (MQ=255)
                                                                                                             gggTGAAGACCATGCTGCCTAAATCAACACCCTGAACATCAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTg                     <  2:1210012/139‑1 (MQ=255)
                                                                                                             aGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTg                     <  1:112016/140‑1 (MQ=255)
                                                                                                             aGGTGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTg                     <  1:883227/140‑1 (MQ=255)
                                                                                                                tGAAGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTg                  <  2:1524184/140‑1 (MQ=255)
                                                                                                                  aaGACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCt                <  1:554162/140‑1 (MQ=255)
                                                                                                                    gACCATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGt              <  2:1397295/140‑1 (MQ=255)
                                                                                                                       cATGCTGCCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCa           >  2:764577/1‑140 (MQ=255)
                                                                                                                         tgctgcCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACg         >  2:64386/1‑140 (MQ=255)
                                                                                                                         tgctgcCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACg         >  1:593609/1‑140 (MQ=255)
                                                                                                                          gctgcCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACgg        >  2:976267/1‑140 (MQ=255)
                                                                                                                            tgcCTAAATCAACGCCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGt      <  2:955/140‑1 (MQ=255)
                                                                                                                            tgcCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGt      <  2:807418/140‑1 (MQ=255)
                                                                                                                            tgcCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGt      <  1:498170/140‑1 (MQ=255)
                                                                                                                            tgcCTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGt      <  2:882852/140‑1 (MQ=255)
                                                                                                                              ccTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCa    <  1:1303287/140‑1 (MQ=255)
                                                                                                                              ccTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCa    <  2:825533/140‑1 (MQ=255)
                                                                                                                              ccTAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCa    <  2:1498339/140‑1 (MQ=255)
                                                                                                                                tAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGGTAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGt  >  1:885740/1‑140 (MQ=255)
                                                                                                                                tAAATCAACACCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGt  <  2:354152/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
AGCCCGGCAGCAACCACGATCGCTTTGACGTTTTCGAGGCTTAAACGCGCCTGATCTTGCACATCAGCCGGGATCTCACCGGTCTGTGGGCAAACCGGTATTTGCCCGGAGGTGAAGACCATGCTGCCTAAATCAACGCCCTGAACATAAGGGCCGATTGCGCCTGGGGCACGTTGCGTTTCGATAATCTTTTTCATACATCCTCCGGCGTCAGAGCGCCTGGGTAAAGGTACGTGAAATAACATCCTGTTGCTGTTCACGGGTCAGT  >  NC_000913/3259914‑3260181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A