Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 138 62.6 2119710 99.4% 2106991 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,682,614 G→A G44G (GGC→GGT)  yphG ← DUF5107 domain‑containing protein YphG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,682,6140GA97.4% 259.2 / ‑2.1 78G44G (GGC→GGT) yphGDUF5107 domain‑containing protein YphG
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base A (40/36);  total (41/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

TCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACGCCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACTTTTACTGGAGTCATGGT  >  NC_000913/2682492‑2682748
                                                                                                                          |                                                                                                                                      
tCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACcgc                                                                                                                       >  1:91386/1‑140 (MQ=255)
tCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACcgc                                                                                                                       >  1:36448/1‑140 (MQ=255)
tCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACcgc                                                                                                                       >  2:130864/1‑140 (MQ=255)
tCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACcgc                                                                                                                       >  2:240736/1‑140 (MQ=255)
tCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACcgc                                                                                                                       >  2:121192/1‑140 (MQ=255)
tCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACcgc                                                                                                                       >  1:917742/1‑140 (MQ=255)
    aCGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCg                                                                                                                   >  2:160623/1‑140 (MQ=255)
     cgcgcgATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCgg                                                                                                                  >  1:366465/1‑140 (MQ=255)
      gcgcgATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGa                                                                                                                 <  2:192064/140‑1 (MQ=255)
      gcgcgATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGa                                                                                                                 <  1:240736/140‑1 (MQ=255)
       cgcgATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGAc                                                                                                                <  2:91386/140‑1 (MQ=255)
          gATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGAt                                                                                                             >  2:72332/1‑140 (MQ=255)
                      cGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAAcg                                                                                                 >  2:415278/1‑140 (MQ=255)
                      cGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAAcg                                                                                                 >  1:694402/1‑140 (MQ=255)
                       gCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAAcgc                                                                                                >  2:557367/1‑140 (MQ=255)
                        cccAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAAcgcg                                                                                               >  2:278363/1‑140 (MQ=255)
                        cccAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAAcgcg                                                                                               >  2:20893/1‑140 (MQ=255)
                        cccAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAAcgcg                                                                                               >  2:141853/1‑140 (MQ=255)
                        cccAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAAcgcg                                                                                               >  1:160604/1‑140 (MQ=255)
                         ccAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGa                                                                                              <  1:278363/140‑1 (MQ=255)
                         ccAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGa                                                                                              <  1:20893/140‑1 (MQ=255)
                           aGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACTATCCCTGATAAACGCGAtt                                                                                            >  1:37022/1‑140 (MQ=255)
                              tCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTc                                                                                         <  2:526039/140‑1 (MQ=255)
                               ccGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTcc                                                                                        <  1:152408/140‑1 (MQ=255)
                                cGGCAGGATCATCACTTTGATGTAGTAGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCa                                                                                       <  1:742646/140‑1 (MQ=255)
                                  gCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAgg                                                                                     >  2:33173/1‑140 (MQ=255)
                                  gCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAgg                                                                                     >  2:27285/1‑140 (MQ=255)
                                  gCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAgg                                                                                     >  1:138017/1‑140 (MQ=255)
                                    aGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGaa                                                                                   <  1:160623/140‑1 (MQ=255)
                                    aGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGaa                                                                                   <  1:130864/140‑1 (MQ=255)
                                     ggATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAAc                                                                                  <  1:129429/140‑1 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAgg                                                                                     >  2:102/1‑135 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAgg                                                                                     <  1:102/135‑1 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACAt                                                                                >  1:653296/1‑140 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACAt                                                                                <  1:415278/140‑1 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACAt                                                                                <  1:747597/140‑1 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACAt                                                                                >  2:505744/1‑140 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACAt                                                                                >  2:650681/1‑140 (MQ=255)
                                       atcatcACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTACAGGAACAt                                                                                >  2:15939/1‑140 (MQ=255)
                                         catcaCTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATgg                                                                              <  2:366465/140‑1 (MQ=255)
                                         catcaCTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATgg                                                                              <  2:990981/140‑1 (MQ=255)
                                         catcaCTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATgg                                                                              <  1:121192/140‑1 (MQ=255)
                                         catcaCTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATgg                                                                              <  1:27285/140‑1 (MQ=255)
                                         catcaCTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATgg                                                                              <  1:72332/140‑1 (MQ=255)
                                                 tGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATgg                                                                              <  1:303891/132‑1 (MQ=255)
                                                 tGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATgg                                                                              >  2:303891/1‑132 (MQ=255)
                                                      tAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACAt                                                                                >  1:957125/1‑125 (MQ=255)
                                                      tAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACAt                                                                                <  2:957125/125‑1 (MQ=255)
                                                       aGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGc                                                                >  1:592938/1‑140 (MQ=255)
                                                        gTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCg                                                               >  2:695772/1‑140 (MQ=255)
                                                         tCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATg                                                                               >  1:340762/1‑123 (MQ=255)
                                                         tCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATg                                                                               <  2:340762/123‑1 (MQ=255)
                                                         tCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCgg                                                              >  1:951074/1‑140 (MQ=255)
                                                         tCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCgg                                                              >  1:646480/1‑140 (MQ=255)
                                                           gTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGcc                                                            >  1:367482/1‑140 (MQ=255)
                                                           gTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGcc                                                            <  1:33173/140‑1 (MQ=255)
                                                            ttttCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGccc                                                           <  2:138017/140‑1 (MQ=255)
                                                                   gCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCa                                                    >  2:761617/1‑140 (MQ=255)
                                                                      acacCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAg                                                 >  2:843593/1‑140 (MQ=255)
                                                                       cacCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCgg                                                         <  1:421853/131‑1 (MQ=255)
                                                                       cacCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCgg                                                         >  2:421853/1‑131 (MQ=255)
                                                                          cGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCg                                             >  1:76704/1‑140 (MQ=255)
                                                                              tGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACGCCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGAt                                         >  2:53682/1‑140 (MQ=255)
                                                                               gCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGAtc                                        >  1:276689/1‑140 (MQ=255)
                                                                                ccAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGt                                               <  1:860853/132‑1 (MQ=255)
                                                                                ccAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGt                                               >  2:860853/1‑132 (MQ=255)
                                                                                  aGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCa                                     >  1:72293/1‑140 (MQ=255)
                                                                                       ttCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAAcgcg                                >  2:450044/1‑140 (MQ=255)
                                                                                        tCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACgcgc                               <  2:917742/140‑1 (MQ=255)
                                                                                         cAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGct                              >  1:777524/1‑140 (MQ=255)
                                                                                               tttCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGcc                        <  1:450044/140‑1 (MQ=255)
                                                                                                ttCTGCTCGCTCAGCGTATCGGTCACGCCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCca                       <  1:53682/140‑1 (MQ=255)
                                                                                                ttCTGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCca                       <  1:549301/140‑1 (MQ=255)
                                                                                                   tGCTCGCTCAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCacac                    <  1:695772/140‑1 (MQ=255)
                                                                                                     ctcgctcAGCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACtt                  <  2:694402/140‑1 (MQ=255)
                                                                                                             gCGTATCGGTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACTTTTACTGGa          <  1:141853/140‑1 (MQ=255)
                                                                                                                    ggTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACTTTTACTGGAGTCATgg   <  2:72293/140‑1 (MQ=255)
                                                                                                                    ggTCACACCGTAGGGACAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACTTTTACTGGAGTCATgg   <  2:951074/140‑1 (MQ=255)
                                                                                                                     gTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACTTTTACTGGAGTCATGGt  <  1:363239/140‑1 (MQ=255)
                                                                                                                     gTCACACCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACTTTTACTGGAGTCATGGt  <  1:650681/140‑1 (MQ=255)
                                                                                                                          |                                                                                                                                      
TCCCACGCGCGATGCACCCGACCGCCCAGTTCCGGCAGGATCATCACTTTGATGTAGTCGTTTTCCAGCCACACCGCCTGCCAGGATTTCAGGGTTTTCTGCTCGCTCAGCGTATCGGTCACGCCGTAGGGATAAACCGCGCCGGACGATCCCTGATAAACGCGATTTTCCAGGAACATGGGATGTATATCCTGCGGCCCGGTTTCATAGGTCGGGATCTCAACGCGCTCTTGCCACACTTTTACTGGAGTCATGGT  >  NC_000913/2682492‑2682748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A