Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 138 62.6 2119710 99.4% 2106991 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,949,313 G→A R24R (CGG→CGA)  argA → N‑acetylglutamate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,949,3130GA100.0% 261.7 / NA 73R24R (CGG→CGA) argAN‑acetylglutamate synthase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (45/28);  total (45/28)

GCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGATCG  >  NC_000913/2949178‑2949449
                                                                                                                                       |                                                                                                                                        
gCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGaa                                                                                                                                      >  1:389056/1‑140 (MQ=255)
     cTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCAAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACg                                                                                                                                 >  2:585681/1‑140 (MQ=255)
      tGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGt                                                                                                                                >  1:864087/1‑140 (MQ=255)
      tGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGt                                                                                                                                >  1:15881/1‑140 (MQ=255)
      tGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGt                                                                                                                                >  2:544096/1‑140 (MQ=255)
      tGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGt                                                                                                                                >  1:430869/1‑140 (MQ=255)
      tGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGt                                                                                                                                >  1:411935/1‑140 (MQ=255)
      tGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCAAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGt                                                                                                                                <  1:585681/140‑1 (MQ=255)
        cGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGttt                                                                                                                              >  1:1005270/1‑140 (MQ=255)
        cGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGttt                                                                                                                              >  1:659660/1‑140 (MQ=255)
        cGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGttt                                                                                                                              >  1:2307/1‑140 (MQ=255)
         gAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTg                                                                                                                             <  1:3255/140‑1 (MQ=255)
                   aaTAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCt                                                                                                                   <  2:389056/140‑1 (MQ=255)
                     tAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTcg                                                                                                                 <  1:588968/140‑1 (MQ=255)
                           tACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTg                                                                                                           <  1:356785/140‑1 (MQ=255)
                                tAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGcc                                                                                                      >  1:93036/1‑140 (MQ=255)
                                        aataatCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCa                                                                                              >  2:381862/1‑140 (MQ=255)
                                            atCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATgag                                                                                          >  1:573455/1‑140 (MQ=255)
                                               aTGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAAt                                                                                       <  2:1005270/140‑1 (MQ=255)
                                               aTGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAAt                                                                                       <  2:430869/140‑1 (MQ=255)
                                               aTGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAAt                                                                                       <  1:381862/140‑1 (MQ=255)
                                                tGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAAtt                                                                                      >  2:1006913/1‑140 (MQ=255)
                                                  cAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTtc                                                                                    >  2:793319/1‑140 (MQ=255)
                                                      gagGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCa                                                                                <  1:793319/140‑1 (MQ=255)
                                                       agGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAg                                                                               >  2:137009/1‑140 (MQ=255)
                                                       agGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAg                                                                               >  2:280098/1‑140 (MQ=255)
                                                       agGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAg                                                                               >  1:919375/1‑140 (MQ=255)
                                                       agGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAg                                                                               >  2:307605/1‑140 (MQ=255)
                                                       agGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAg                                                                               >  1:838952/1‑140 (MQ=255)
                                                       agGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAg                                                                               >  1:676043/1‑140 (MQ=255)
                                                        ggTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGt                                                                              <  2:659660/140‑1 (MQ=255)
                                                        ggTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGt                                                                              <  2:864087/140‑1 (MQ=255)
                                                         gtgtGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTa                                                                             <  2:517320/140‑1 (MQ=255)
                                                          tgtgCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAt                                                                            >  1:822454/1‑140 (MQ=255)
                                                          tgtgCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAt                                                                            >  1:42282/1‑140 (MQ=255)
                                                                gTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTaa                                                                      <  1:1006913/140‑1 (MQ=255)
                                                                  ggTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATg                                                                    >  2:366443/1‑140 (MQ=255)
                                                                   gTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGa                                                                   >  1:390197/1‑140 (MQ=255)
                                                                    tAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGat                                                                  >  2:452101/1‑140 (MQ=255)
                                                                        ggAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCg                                                              <  2:822454/140‑1 (MQ=255)
                                                                          aaCGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCggg                                                            <  2:411935/140‑1 (MQ=255)
                                                                           aCGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGgt                                                           <  1:139833/140‑1 (MQ=255)
                                                                             gTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTaa                                                                      >  1:523056/1‑127 (MQ=255)
                                                                             gTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTaa                                                                      <  2:523056/127‑1 (MQ=255)
                                                                                  aCCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGca                                                    <  2:133979/140‑1 (MQ=255)
                                                                                    cGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGcaca                                                  <  2:42282/140‑1 (MQ=255)
                                                                                           gTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCgg                                           <  2:676043/140‑1 (MQ=255)
                                                                                           gTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCgg                                           >  1:784451/1‑140 (MQ=255)
                                                                                              gAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCAt                                        <  2:573455/140‑1 (MQ=255)
                                                                                                     tCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtg                                 >  1:465977/1‑140 (MQ=255)
                                                                                                     tCCGCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtg                                 >  1:627244/1‑140 (MQ=255)
                                                                                                        gCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtggtg                              <  1:420933/140‑1 (MQ=255)
                                                                                                        gCCATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtggtg                              <  1:544096/140‑1 (MQ=255)
                                                                                                          cATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCt                                              <  2:202377/122‑1 (MQ=255)
                                                                                                          cATTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCt                                              >  1:202377/1‑122 (MQ=255)
                                                                                                           aTTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtgg                                >  2:355006/1‑135 (MQ=255)
                                                                                                           aTTCGGTTCCCTATATCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtgg                                <  1:355006/135‑1 (MQ=255)
                                                                                                                       atatCAATACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCa               <  1:1010248/140‑1 (MQ=255)
                                                                                                                             aTACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGTACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCg         >  1:973699/1‑140 (MQ=255)
                                                                                                                              tACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGc        >  1:208995/1‑140 (MQ=255)
                                                                                                                              tACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGc        >  2:265879/1‑140 (MQ=255)
                                                                                                                              tACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGc        >  2:727746/1‑140 (MQ=255)
                                                                                                                              tACCCACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGc        >  2:21840/1‑140 (MQ=255)
                                                                                                                                cccACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAg      >  1:924778/1‑140 (MQ=255)
                                                                                                                                  cACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGAt    >  2:472260/1‑140 (MQ=255)
                                                                                                                                  cACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGAt    >  1:306423/1‑140 (MQ=255)
                                                                                                                                  cACCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGAt    >  2:760201/1‑140 (MQ=255)
                                                                                                                                   aCCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGgcg                 <  2:807959/126‑1 (MQ=255)
                                                                                                                                   aCCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGgcg                 >  1:807959/1‑126 (MQ=255)
                                                                                                                                   aCCGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGATc   >  1:418101/1‑140 (MQ=255)
                                                                                                                                    ccGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGATCg  <  1:21840/140‑1 (MQ=255)
                                                                                                                                    ccGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGATCg  >  1:459033/1‑140 (MQ=255)
                                                                                                                                    ccGAGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGATCg  >  1:897741/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                        
GCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGTCTATGGCGCACGTCCGCAGATCG  >  NC_000913/2949178‑2949449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A