Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	138	62.6	2119710	99.4%	2106991	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,993,641	A→G	T2A (ACT→GCT)	ygeI →	protein YgeI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,993,641	0	A	G	100.0%	277.6 / NA	73	T2A (ACT→GCT)	ygeI	protein YgeI
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (39/34); total (39/34)

TGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGACTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTT  >  NC_000913/2993505‑2993776

tGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTa                                                                                                                                      >  2:209931/1‑140 (MQ=255)

     cTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCa                                                                                                                                 >  1:922295/1‑140 (MQ=255)

     cTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCa                                                                                                                                 >  1:43811/1‑140 (MQ=255)

     cTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCa                                                                                                                                 >  1:346422/1‑140 (MQ=255)

        gTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATc                                                                                                                              >  1:663716/1‑140 (MQ=255)

        gTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATc                                                                                                                              >  1:239720/1‑140 (MQ=255)

        gTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATc                                                                                                                              >  2:985907/1‑140 (MQ=255)

                  caacaGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCaata                                                                                                                    >  1:1022004/1‑140 (MQ=255)

                        agaTAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTAt                                                                                                              >  1:158006/1‑140 (MQ=255)

                          aTAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGt                                                                                                                           >  2:344479/1‑125 (MQ=255)

                          aTAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGt                                                                                                                           <  1:344479/125‑1 (MQ=255)

                          aTAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTAtct                                                                                                            >  2:653491/1‑140 (MQ=255)

                           tAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTAtctc                                                                                                           <  2:466052/140‑1 (MQ=255)

                                    cTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCaa                                                                                                  >  2:192393/1‑140 (MQ=255)

                                    cTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGT‑AAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCaaa                                                                                                 >  1:577233/1‑140 (MQ=255)

                                      aaGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAat                                                                                                <  1:653491/140‑1 (MQ=255)

                                       aGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAata                                                                                               >  2:368974/1‑140 (MQ=255)

                                             tCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGa                                                                                         >  1:777759/1‑140 (MQ=255)

                                                ccTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATg                                                                                      <  2:777759/140‑1 (MQ=255)

                                                  ttATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCa                                                                                    <  2:346422/140‑1 (MQ=255)

                                                  ttATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCa                                                                                    <  1:192393/140‑1 (MQ=255)

                                                    aTTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAAc                                                                                  >  1:949666/1‑140 (MQ=255)

                                                           gATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACggg                                                                               >  2:825599/1‑136 (MQ=255)

                                                           gATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACggg                                                                               <  1:825599/136‑1 (MQ=255)

                                                               tttAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAg                                                                       >  1:47686/1‑140 (MQ=255)

                                                               tttAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAg                                                                       <  2:663716/140‑1 (MQ=255)

                                                                ttAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGt                                                                      >  2:116362/1‑140 (MQ=255)

                                                                  aaaaTGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCg                                                                    >  2:12307/1‑140 (MQ=255)

                                                                         tctAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTAATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCAtt                                                             >  1:996040/1‑140 (MQ=255)

                                                                          ctAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGtgat                                                                           >  2:739703/1‑125 (MQ=255)

                                                                          ctAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGtgat                                                                           <  1:739703/125‑1 (MQ=255)

                                                                                ttAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATaaa                                                      <  1:985907/140‑1 (MQ=255)

                                                                                   aaaGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAacac                                                   >  2:761303/1‑140 (MQ=255)

                                                                                   aaaGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAacac                                                   >  2:358200/1‑140 (MQ=255)

                                                                                   aaaGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAacac                                                   >  2:117980/1‑140 (MQ=255)

                                                                                       tATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCa                                               >  1:336536/1‑140 (MQ=255)

                                                                                        atgatgTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCaa                                              >  2:203862/1‑140 (MQ=255)

                                                                                        atgatgTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCaa                                              >  2:48473/1‑140 (MQ=255)

                                                                                         tgatgTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAac                                             <  1:12307/140‑1 (MQ=255)

                                                                                           atgTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAacac                                           <  2:336536/140‑1 (MQ=255)

                                                                                            tgTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATaaa                                                      >  2:512135/1‑128 (MQ=255)

                                                                                            tgTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATaaa                                                      <  1:512135/128‑1 (MQ=255)

                                                                                             gTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCa                                         <  1:203862/140‑1 (MQ=255)

                                                                                             gTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCa                                         <  1:48473/140‑1 (MQ=255)

                                                                                               taaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGt                                       <  2:577233/139‑1 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATGAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATaaa                                                      <  2:993117/125‑1 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATaaa                                                      >  1:993117/1‑125 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGt                                       <  1:761303/140‑1 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGt                                       <  1:117980/140‑1 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGt                                       <  2:239720/140‑1 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGt                                       <  1:358200/140‑1 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTAATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGt                                       <  2:996040/140‑1 (MQ=255)

                                                                                               aaaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATAGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGt                                       <  1:459001/140‑1 (MQ=255)

                                                                                                aaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTg                                      <  2:47686/140‑1 (MQ=255)

                                                                                                aaGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTg                                      <  1:782023/140‑1 (MQ=255)

                                                                                                 aGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGc                                     <  2:949666/140‑1 (MQ=255)

                                                                                                 aGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGc                                     <  2:1022004/140‑1 (MQ=255)

                                                                                                 aGACCATTGGCCTGGACAATTAAAAAAGGG‑GCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCt                                    >  2:474618/1‑140 (MQ=255)

                                                                                                       ttGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGa                               >  2:105443/1‑140 (MQ=255)

                                                                                                        tGGCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGAt                              >  1:51221/1‑140 (MQ=255)

                                                                                                          gCCTGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATAc                            <  1:105443/140‑1 (MQ=255)

                                                                                                             tGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGa                         <  2:922295/140‑1 (MQ=255)

                                                                                                             tGGACAATTAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGa                         >  2:950277/1‑140 (MQ=255)

                                                                                                                    ttAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATa                  >  2:518503/1‑140 (MQ=255)

                                                                                                                    ttAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATa                  >  1:939093/1‑140 (MQ=255)

                                                                                                                    ttAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATa                  >  2:351412/1‑140 (MQ=255)

                                                                                                                    ttAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATa                  <  1:116362/140‑1 (MQ=255)

                                                                                                                     tAAAAAAGGGAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATAc                 >  2:976283/1‑140 (MQ=255)

                                                                                                                     tAAAAAAGGG‑GCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACa                <  1:474618/140‑1 (MQ=255)

                                                                                                                            gggAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCAtt          >  2:484840/1‑140 (MQ=255)

                                                                                                                              gAGCTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTta        >  2:660913/1‑140 (MQ=255)

                                                                                                                                 cTTTATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAg     <  2:43811/140‑1 (MQ=255)

                                                                                                                                   ttATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGtt   <  2:158006/140‑1 (MQ=255)

                                                                                                                                    tATGGCTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGttt  <  1:368974/140‑1 (MQ=255)

TGCAACTTGTTATTTAAACAACAGAGATAAAAATATCTAAGATATTCACCTTATTGCAAGATATTTAAAATGCTCTAGAGTTAAAAGTATGATGTAAAGACCATTGGCCTGGACAATTAAAAAAGGGAGCTTTATGACTAATCCAATCGGTATCAATAATTTATCTCAAAGTTCAAATATAGCGAATGCAACGGGTGATGAAGTCGTATCATTAGATAAACACATCAACACCAGTGCTACTGATACAGATCAAATACAAGCATTTATAGTTT  >  NC_000913/2993505‑2993776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A