Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 126 72.5 2472046 99.4% 2457213 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,011,868 C→T G635G (GGC→GGT)  uup → ATP‑binding protein with possible role in replication

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,011,8680CT100.0% 241.9 / NA 70G635G (GGC→GGT) uupATP‑binding protein with possible role in replication
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (34/36);  total (34/36)

AGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAAT  >  NC_000913/1011733‑1012002
                                                                                                                                       |                                                                                                                                      
aGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGAt                                                                                                                                    >  1:798204/1‑140 (MQ=255)
     cGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCaa                                                                                                                               >  1:1230950/1‑140 (MQ=255)
         tGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATa                                                                                                                           >  2:750018/1‑140 (MQ=255)
          gCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAg                                                                                                                          <  2:979157/140‑1 (MQ=255)
          gCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAg                                                                                                                          <  1:594225/140‑1 (MQ=255)
            ttccttcTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATTGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTc                                                                                                                        <  2:431888/140‑1 (MQ=255)
            ttccttcTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTc                                                                                                                        >  2:574531/1‑140 (MQ=255)
               cttcttCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGAt                                                                                                                     <  2:244572/140‑1 (MQ=255)
                      agtcagCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACa                                                                                                              >  1:760830/1‑140 (MQ=255)
                        tcagCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACaga                                                                                                            <  1:308936/140‑1 (MQ=255)
                        tcagCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGAAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACaga                                                                                                            >  1:628869/1‑140 (MQ=255)
                          agCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAg                                                                                                                          <  2:517232/124‑1 (MQ=255)
                          agCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAg                                                                                                                          <  2:1178478/124‑1 (MQ=255)
                          agCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAg                                                                                                                          >  1:1178478/1‑124 (MQ=255)
                          agCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTAATCGCAAAATAg                                                                                                                          >  1:517232/1‑124 (MQ=255)
                           gCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGAc                                                                                                         >  2:621272/1‑140 (MQ=255)
                            ccGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACa                                                                                                        >  1:228694/1‑140 (MQ=255)
                            ccGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACa                                                                                                        >  2:586821/1‑140 (MQ=255)
                               cATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCt                                                                                                     >  1:939210/1‑140 (MQ=255)
                                  gAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGAc                                                                                                  <  2:228694/140‑1 (MQ=255)
                                         cGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTa                                                                                           >  2:541007/1‑140 (MQ=255)
                                           cAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTaaa                                                                                         <  1:574531/140‑1 (MQ=255)
                                             aaaaGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAAt                                                                                       <  1:192720/140‑1 (MQ=255)
                                              aaaGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAAtt                                                                                      <  1:586821/140‑1 (MQ=255)
                                                        ctGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGaa                                                                            <  1:621272/140‑1 (MQ=255)
                                                        ctGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGaa                                                                            <  2:939210/140‑1 (MQ=255)
                                                         tGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAAc                                                                           <  1:541007/140‑1 (MQ=255)
                                                         tGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAAc                                                                           <  2:1230950/140‑1 (MQ=255)
                                                            tatGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACt                                                                          <  2:150876/138‑1 (MQ=255)
                                                            tatGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACt                                                                          >  1:150876/1‑138 (MQ=255)
                                                            tatGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTgg                                                                        >  1:196358/1‑140 (MQ=255)
                                                                              ggAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGaaaa                                                      >  1:117087/1‑140 (MQ=255)
                                                                                    ggAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAaca                                                <  1:325067/140‑1 (MQ=255)
                                                                                          aGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGt                                          >  1:128911/1‑140 (MQ=255)
                                                                                           gCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGtt                                         >  1:1227569/1‑140 (MQ=255)
                                                                                           gCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGtt                                         >  2:1078460/1‑140 (MQ=255)
                                                                                                tGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTc                                     <  1:450915/139‑1 (MQ=255)
                                                                                                tGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTc                                     >  2:450915/1‑139 (MQ=255)
                                                                                                 gAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCAt                                   <  2:689272/140‑1 (MQ=255)
                                                                                                      cTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTa                                        <  1:332721/130‑1 (MQ=255)
                                                                                                      cTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTa                                        >  2:332721/1‑130 (MQ=255)
                                                                                                      cTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCAt                                   >  2:1083418/1‑135 (MQ=255)
                                                                                                      cTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCAt                                   <  1:1083418/135‑1 (MQ=255)
                                                                                                       tGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTc                                     >  1:770118/1‑132 (MQ=255)
                                                                                                       tGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTc                                     <  2:770118/132‑1 (MQ=255)
                                                                                                       tGGGAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTaa                             >  1:464405/1‑140 (MQ=255)
                                                                                                         ggAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTg                                >  2:968950/1‑135 (MQ=255)
                                                                                                         ggAGTATCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTg                                <  1:968950/135‑1 (MQ=255)
                                                                                                              aTCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCGGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      <  1:32108/140‑1 (MQ=255)
                                                                                                              aTCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      <  2:196358/140‑1 (MQ=255)
                                                                                                              aTCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      <  2:798204/140‑1 (MQ=255)
                                                                                                              aTCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      <  2:708381/140‑1 (MQ=255)
                                                                                                               tCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCAt                                   >  2:609393/1‑126 (MQ=255)
                                                                                                               tCTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCAt                                   <  1:609393/126‑1 (MQ=255)
                                                                                                                cTTGAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGca                    <  2:339375/140‑1 (MQ=255)
                                                                                                                   gAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      <  2:551864/135‑1 (MQ=255)
                                                                                                                   gAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      >  1:551864/1‑135 (MQ=255)
                                                                                                                   gAAGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGcatca                 <  2:117087/140‑1 (MQ=255)
                                                                                                                    aaGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGca                    >  2:921295/1‑136 (MQ=255)
                                                                                                                    aaGCGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGca                    <  1:921295/136‑1 (MQ=255)
                                                                                                                       cGTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTaa             >  2:441807/1‑140 (MQ=255)
                                                                                                                        gTTAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAg            <  1:441807/140‑1 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      >  1:1105742/1‑129 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      >  1:341863/1‑129 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      <  2:1105742/129‑1 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAgcg                      <  2:341863/129‑1 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTa              <  2:153420/137‑1 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTa              >  1:153420/1‑137 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAgg           >  2:690549/1‑140 (MQ=255)
                                                                                                                         ttAAAAAATGGTGGTTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAgg           >  1:626416/1‑140 (MQ=255)
                                                                                                                                  ggtggtTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAAt  <  2:464405/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
AGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAAT  >  NC_000913/1011733‑1012002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A