Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	126	72.5	2472046	99.4%	2457213	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,765,774	(C)_5→6	coding (3/264 nt)	yfjM ←	CP4‑57 prophage; protein YfjM

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,765,769	1	.	C	96.2%	279.0 / 2.5	80	coding (8/264 nt)	yfjM	CP4‑57 prophage; protein YfjM
Reads supporting (aligned to +/- strand): ref base . (1/2); new base C (27/50); total (28/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCATGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑CCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCC  >  NC_000913/2765631‑2765893

atcatGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACatca‑t‑c                                                                                                                             >  1:244692/1‑140 (MQ=255)

atcatGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACatca‑t‑c                                                                                                                             >  1:214558/1‑140 (MQ=255)

atcatGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACatca‑t‑c                                                                                                                             >  2:280958/1‑140 (MQ=255)

atcatGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACatca‑t‑c                                                                                                                             >  1:803682/1‑140 (MQ=255)

atcatGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTATGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACatca‑t‑c                                                                                                                             >  2:1101754/1‑140 (MQ=255)

  catGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑ccc                                                                                                                           >  2:654727/1‑140 (MQ=255)

   atgatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccc                                                                                                                          <  1:234874/140‑1 (MQ=255)

   atgatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccc                                                                                                                          <  1:357672/140‑1 (MQ=255)

   atgatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccc                                                                                                                          <  1:814080/140‑1 (MQ=255)

   atgatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccc                                                                                                                          <  2:227564/140‑1 (MQ=255)

     gatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCATGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccccc                                                                                                                        >  2:851189/1‑139 (MQ=255)

     gatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccccc                                                                                                                        <  2:728288/140‑2 (MQ=255)

     gatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccccc                                                                                                                        <  1:443909/140‑2 (MQ=255)

     gatgGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑cccccc                                                                                                                        <  1:280958/140‑2 (MQ=255)

        ggCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑ccccccatt                                                                                                                     >  2:192783/1‑136 (MQ=255)

          cTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCAtttt                                                                                                                    >  2:637445/1‑140 (MQ=255)

               tttGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGa                                                                                                               <  1:764803/140‑1 (MQ=255)

               tttGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGa                                                                                                               <  2:214558/140‑1 (MQ=255)

                  gggCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTg                                                                                                            <  2:514938/140‑1 (MQ=255)

                    gCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcc                                                                                                          <  1:637445/140‑1 (MQ=255)

                    gCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcc                                                                                                          <  1:192783/140‑1 (MQ=255)

                    gCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcc                                                                                                          <  1:380699/140‑1 (MQ=255)

                        tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcccccc                                                                                                      >  1:150618/1‑140 (MQ=255)

                        tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcccccc                                                                                                      <  2:943825/140‑1 (MQ=255)

                        tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcccccc                                                                                                      >  1:974987/1‑140 (MQ=255)

                        tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcccccc                                                                                                      >  1:767426/1‑140 (MQ=255)

                        tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcccccc                                                                                                      >  2:358755/1‑140 (MQ=255)

                        tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGcccccc                                                                                                      >  1:597114/1‑140 (MQ=255)

                        tctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGCGGACTGcccccc                                                                                                      >  1:232522/1‑140 (MQ=255)

                         ctGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGccccccc                                                                                                     <  1:820521/140‑1 (MQ=255)

                          tGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCg                                                                                                    <  2:427482/140‑1 (MQ=255)

                          tGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCg                                                                                                    <  2:150618/140‑1 (MQ=255)

                               gTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGa                                                                                               <  2:90781/140‑1 (MQ=255)

                               gTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGa                                                                                               <  1:295652/140‑1 (MQ=255)

                               gTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGa                                                                                               <  1:658972/140‑1 (MQ=255)

                               gTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGa                                                                                               <  1:166123/140‑1 (MQ=255)

                                 tCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACg                                                                                             >  1:895902/1‑140 (MQ=255)

                                    gTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATc                                                                                          >  2:636661/1‑140 (MQ=255)

                                    gTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATc                                                                                          <  2:232522/140‑1 (MQ=255)

                                    gTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATc                                                                                          <  1:1145180/140‑1 (MQ=255)

                                     tttCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATcc                                                                                         <  1:63554/140‑1 (MQ=255)

                                        cGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGc                                                                                      <  2:803682/140‑1 (MQ=255)

                                         gACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGcc                                                                                     <  2:397534/140‑1 (MQ=255)

                                          aCGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACTGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGccc                                                                                    <  2:1220689/140‑1 (MQ=255)

                                          aCGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCg                                                                                                    >  1:228014/1‑124 (MQ=255)

                                          aCGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCg                                                                                                    <  2:228014/124‑1 (MQ=255)

                                          aCGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGccc                                                                                    <  1:1154863/140‑1 (MQ=255)

                                               gAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAg                                                                               <  2:767426/140‑1 (MQ=255)

                                               gAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAg                                                                               >  1:458973/1‑140 (MQ=255)

                                                     tttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAg                                                                         <  1:654727/140‑1 (MQ=255)

                                                      ttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt                                                                        <  1:851189/140‑1 (MQ=255)

                                                      ttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt                                                                        <  1:857519/140‑1 (MQ=255)

                                                      ttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt                                                                        <  1:21475/140‑1 (MQ=255)

                                                      ttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt                                                                        <  1:952801/140‑1 (MQ=255)

                                                      ttCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt                                                                        <  1:971964/140‑1 (MQ=255)

                                                        cTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGcc                                                                     <  1:221599/140‑1 (MQ=255)

                                                         ttGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGcc                                                                     <  2:68427/140‑1 (MQ=255)

                                                         ttGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGcc                                                                     <  1:84459/140‑1 (MQ=255)

                                                         ttGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGcc                                                                     <  1:342039/140‑1 (MQ=255)

                                                                      aataatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTg                                                        >  2:729555/1‑140 (MQ=255)

                                                                             aCTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAAtt                                                >  1:126290/1‑140 (MQ=255)

                                                                                 aGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAg                                             <  1:358755/140‑1 (MQ=255)

                                                                                   tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCa                                           >  1:542146/1‑140 (MQ=255)

                                                                                   tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCa                                           <  2:244692/140‑1 (MQ=255)

                                                                                    aTCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCaa                                          >  2:1202572/1‑140 (MQ=255)

                                                                                    aTCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCaa                                          >  1:15359/1‑140 (MQ=255)

                                                                                      cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAAt                                        <  1:729555/140‑1 (MQ=255)

                                                                                      cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATAA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAAt                                        >  2:502635/1‑140 (MQ=255)

                                                                                        aGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCa                                      >  1:1116760/1‑140 (MQ=255)

                                                                                         gTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCaa                                     >  1:923286/1‑140 (MQ=255)

                                                                                           tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                   <  1:1044561/140‑1 (MQ=255)

                                                                                           tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                   <  1:1101754/140‑1 (MQ=255)

                                                                                           tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATAA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                   <  1:502635/140‑1 (MQ=255)

                                                                                            gctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATaca                                 <  2:126290/140‑1 (MQ=255)

                                                                                             ctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATaca                                 >  1:920705/1‑140 (MQ=255)

                                                                                             ctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑CCCCCATTTTGTGGACAGCCCCCCCGGAAGACTATACTGACCTATAGTTGTAGGGCCCCCTATTCAGGTGGCTAATTTTGGCAAATCAATacac                                >  2:817606/1‑140 (MQ=255)

                                                                                                  tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCa                            >  1:55442/1‑140 (MQ=255)

                                                                                                  tGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCa                            <  1:636661/140‑1 (MQ=255)

                                                                                                   ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAAt                                        <  1:733884/127‑1 (MQ=255)

                                                                                                   ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAAt                                        >  2:733884/1‑127 (MQ=255)

                                                                                                    gTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgg                          >  2:1088485/1‑140 (MQ=255)

                                                                                                    gTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑CCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                         <  1:817606/140‑1 (MQ=255)

                                                                                                     tGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                         <  1:1202572/140‑1 (MQ=255)

                                                                                                          tCAGGAAGAGGTTACCGAAACGATGGACATCATT‑CCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta                    <  1:1039429/140‑1 (MQ=255)

                                                                                                          tCAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta                    <  2:542146/140‑1 (MQ=255)

                                                                                                           cAGGAAGAGGTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtat                   <  1:1061499/140‑1 (MQ=255)

                                                                                                              gAAGAGGTTACCGAAACGATGGTCATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtattat                >  2:120855/1‑140 (MQ=255)

                                                                                                                   ggTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTag           >  2:827779/1‑140 (MQ=255)

                                                                                                                    gTTACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTaga          >  2:1009261/1‑140 (MQ=255)

                                                                                                                      tACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt        <  2:124588/140‑1 (MQ=255)

                                                                                                                      tACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt        <  2:597114/140‑1 (MQ=255)

                                                                                                                      tACCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt        <  1:827779/140‑1 (MQ=255)

                                                                                                                       aCCGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGtt       <  1:1088485/140‑1 (MQ=255)

                                                                                                                        ccGAAACGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGttt      >  2:479060/1‑140 (MQ=255)

                                                                                                                            aaCGATGGACATCA‑TCCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTcccc  <  2:920705/140‑1 (MQ=255)

ATCATGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGACGTAGAATTTTTTCTTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCA‑T‑CCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCC  >  NC_000913/2765631‑2765893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A