Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	828,529	A→G	C151C (TGT→TGC)	ybhF ←	putative ABC exporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	828,529	0	A	G	100.0%	226.0 / NA	64	C151C (TGT→TGC)	ybhF	putative ABC exporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (39/25); total (39/25)

CGAGGTACTCCAGAGGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTACAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACGCTGCGCA  >  NC_000913/828394‑828662

cGAGGTACTCCAGAGGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAgg                                                                                                                                   <  1:848494/140‑1 (MQ=255)

 gAGGTACTCCAGAGGATTAACATCCCTTCGCCCGCCAGCTCATCCACCATCTGCCACGGTTCGCGCCGTGAGCTAGGGTCCACGCCGCCCCCGGCTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGc                                                                                                                                  >  2:911308/1‑140 (MQ=255)

     tACTCCAGAGGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGa                                                                                                                              >  1:258605/1‑140 (MQ=255)

        tCCAGAGGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCg                                                                                                                           >  2:937499/1‑140 (MQ=255)

          cAGAGGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAg                                                                                                                         >  2:1104789/1‑140 (MQ=255)

          cAGAGGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAg                                                                                                                         >  2:1282475/1‑140 (MQ=255)

            gagGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGtt                                                                                                                       <  1:1451736/140‑1 (MQ=255)

              ggATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGtttt                                                                                                                     >  1:46947/1‑140 (MQ=255)

               gATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGttttt                                                                                                                    >  2:1202613/1‑140 (MQ=255)

               gATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGCCCGCGCCGTGAGCTAGGGCCAACGCCGACGCCGGGCTCATCGAGCAGCGACACTTTCGGATCGCCCACCAGGGGGCAGGCCAGACCGGGttttt                                                                                                                    >  2:1043502/1‑140 (MQ=255)

                aTTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTg                                                                                                                   <  1:1394831/140‑1 (MQ=255)

                 ttAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGt                                                                                                                  >  1:1045526/1‑140 (MQ=255)

                         ccTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCTGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATccc                                                                                                          >  2:840409/1‑140 (MQ=255)

                         ccTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATccc                                                                                                          >  2:265067/1‑140 (MQ=255)

                         ccTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATccc                                                                                                          >  2:574304/1‑140 (MQ=255)

                         ccTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATccc                                                                                                          >  1:373886/1‑140 (MQ=255)

                                   ccAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGc                                                                                                >  1:168959/1‑140 (MQ=255)

                                           tGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGc                                                                                        <  2:1044894/140‑1 (MQ=255)

                                            gCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGcc                                                                                       >  1:1336091/1‑140 (MQ=255)

                                                cATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCACCACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGc                                                                                   <  1:1379652/140‑1 (MQ=255)

                                                cATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCGCCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGc                                                                                   <  2:46947/140‑1 (MQ=255)

                                                 aTCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCg                                                                                  >  1:638747/1‑140 (MQ=255)

                                                  tCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGt                                                                                 >  2:823980/1‑140 (MQ=255)

                                                  tCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGt                                                                                 >  2:1265013/1‑140 (MQ=255)

                                                  tCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGt                                                                                 >  1:443270/1‑140 (MQ=255)

                                                  tCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGt                                                                                 >  1:1263898/1‑140 (MQ=255)

                                                  tCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGt                                                                                 >  1:603276/1‑140 (MQ=255)

                                                  ccTGCCACAGTTCCCGCCCAGAGATAGTGTCAACCCCGACGCCCGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTTCAGTCCAGACCGCGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGTCga                                                                                 >  2:990206/2‑139 (MQ=255)

                                                     gCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCg                                                                              >  2:1523190/1‑140 (MQ=255)

                                                      ccACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCgg                                                                             >  1:269589/1‑140 (MQ=255)

                                                      ccACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCgg                                                                             >  1:233322/1‑140 (MQ=255)

                                                        acaGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTa                                                                           <  2:834629/140‑1 (MQ=255)

                                                          aGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTaaa                                                                         <  2:48644/140‑1 (MQ=255)

                                                          aGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTaaa                                                                         <  2:1025199/140‑1 (MQ=255)

                                                          aGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTaaa                                                                         <  2:1039078/140‑1 (MQ=255)

                                                          aGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTaaa                                                                         >  1:494750/1‑140 (MQ=255)

                                                            ttCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACg                                                                       >  2:974763/1‑140 (MQ=255)

                                                            ttCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACg                                                                       >  1:1050846/1‑140 (MQ=255)

                                                             tCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACgg                                                                      <  1:1520674/140‑1 (MQ=255)

                                                                cgcCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGccc                                                                   <  2:1045526/140‑1 (MQ=255)

                                                                    gTGAGTTAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCAACAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAaga                                                               >  2:693977/1‑140 (MQ=255)

                                                                     tGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAagag                                                              <  1:265067/140‑1 (MQ=255)

                                                                      gagaTAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGCGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAgaga                                                             >  2:256511/1‑140 (MQ=255)

                                                                             ggTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAAc                                                      >  2:242887/1‑140 (MQ=255)

                                                                                 aaCGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCca                                                  >  1:91063/1‑140 (MQ=255)

                                                                                 aaCGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCca                                                  >  1:1038255/1‑140 (MQ=255)

                                                                                  acgccgacgccgGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCcag                                                 >  2:93657/1‑140 (MQ=255)

                                                                                  acgccgacgccgGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCcag                                                 >  1:642559/1‑140 (MQ=255)

                                                                                   cgccgacgccgGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCcagc                                                >  2:265376/1‑140 (MQ=255)

                                                                                   cgccgacgccgGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCcagc                                                >  1:1568687/1‑140 (MQ=255)

                                                                                     ccgacgccgGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCcagcag                                              <  1:1483277/140‑1 (MQ=255)

                                                                                        acgccgGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCg                                           >  2:556164/1‑140 (MQ=255)

                                                                                               gTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCaaaa                                    <  2:342883/140‑1 (MQ=255)

                                                                                                    tCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCAGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTg                               >  1:1381885/1‑140 (MQ=255)

                                                                                                          agcaACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACg                         <  2:1505659/140‑1 (MQ=255)

                                                                                                            caACACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTg                       >  2:244061/1‑140 (MQ=255)

                                                                                                             aaCACTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGc                      <  2:1038255/140‑1 (MQ=255)

                                                                                                              acacTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGcc                     >  2:441963/1‑140 (MQ=255)

                                                                                                              acacTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGcc                     <  1:93657/140‑1 (MQ=255)

                                                                                                                ccTTTCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTc                   <  2:233322/139‑1 (MQ=255)

                                                                                                                    tCGGTTCGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCg               >  1:514996/1‑140 (MQ=255)

                                                                                                                          cGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCCCCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACg         <  1:516458/140‑1 (MQ=255)

                                                                                                                          cGCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACg         <  2:911273/140‑1 (MQ=255)

                                                                                                                           gCCCACCAGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACGc        >  1:1084069/1‑140 (MQ=255)

                                                                                                                                 caGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACGCTGCGCa  <  1:693977/140‑1 (MQ=255)

                                                                                                                                 caGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACGCTGCGCa  <  1:1104789/140‑1 (MQ=255)

                                                                                                                                 caGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACGCTGCGCa  <  2:804812/140‑1 (MQ=255)

                                                                                                                                 caGGGTGCAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACGCTGCGCa  <  2:339627/140‑1 (MQ=255)

CGAGGTACTCCAGAGGATTAACATCCCTTCGCCCGCCAGCTCATGCACCATCTGCCACAGTTCGCGCCGTGAGATAGGGTCAACGCCGACGCCGGGTTCATCGAGCAGCAACACTTTCGGTTCGCCCACCAGGGTACAGGCCAGACCGAGTTTTTGTTTCATCCCACCGGAGAGCTTGCCCGCCAGGCGTCCGGTAAACGGCCCAAGAGACGTAAACTCCAGCAGGCGAGCAAAAGTTTGCTTACGTGCCTCGCCGGTGACGCTGCGCA  >  NC_000913/828394‑828662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A