Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	871,184	T→C	V73A (GTG→GCG)	gsiC →	glutathione ABC transporter membrane subunit GsiC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	871,184	0	T	C	100.0%	395.1 / NA	103	V73A (GTG→GCG)	gsiC	glutathione ABC transporter membrane subunit GsiC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (58/45); total (58/45)

Only 100 of 103 total aligned reads displayed.

TATGCTGCCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGTGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAT  >  NC_000913/871050‑871319

tatGCTGCCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAgg                                                                                                                                    >  2:1180483/1‑140 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              >  1:1026074/1‑140 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              >  2:973935/1‑140 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              >  2:558738/1‑140 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              >  2:112126/1‑140 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              >  1:988574/1‑140 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              >  1:959434/1‑140 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              <  1:667494/140‑1 (MQ=255)

      gcCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAtt                                                                                                                              >  1:1391605/1‑140 (MQ=255)

       cccGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAttt                                                                                                                             >  2:1378726/1‑140 (MQ=255)

       cccGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAttt                                                                                                                             >  1:458286/1‑140 (MQ=255)

       cccGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAttt                                                                                                                             >  2:1338442/1‑140 (MQ=255)

       cccGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAttt                                                                                                                             >  1:629347/1‑140 (MQ=255)

       cccGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGAttt                                                                                                                             >  2:259208/1‑140 (MQ=255)

           gCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGc                                                                                                                         <  1:26827/140‑1 (MQ=255)

           gCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGc                                                                                                                         <  1:934804/140‑1 (MQ=255)

           gCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGc                                                                                                                         >  2:912989/1‑140 (MQ=255)

           gCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGc                                                                                                                         <  1:1561473/140‑1 (MQ=255)

            cGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGcc                                                                                                                        <  1:1225528/140‑1 (MQ=255)

                  ggCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGa                                                                                                                  <  1:608213/140‑1 (MQ=255)

                          tgattgCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTcg                                                                                                          <  2:1034904/140‑1 (MQ=255)

                          tgattgCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTcg                                                                                                          <  1:1366711/140‑1 (MQ=255)

                                   ggCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCg                                                                                                 >  1:693415/1‑140 (MQ=255)

                                   ggCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCg                                                                                                 >  1:921629/1‑140 (MQ=255)

                                     cccGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGCGTCGCGTCGTCCGGt                                                                                               >  1:815810/1‑140 (MQ=255)

                                         aaGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGcc                                                                                           <  1:558738/140‑1 (MQ=255)

                                          aGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCg                                                                                          <  2:1467679/140‑1 (MQ=255)

                                                   gcAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTg                                                                                 >  2:1218991/1‑140 (MQ=255)

                                                       gTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAg                                                                             >  2:1448088/1‑140 (MQ=255)

                                                        ttATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGc                                                                            <  2:1492639/140‑1 (MQ=255)

                                                        ttATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGc                                                                            <  1:1324007/140‑1 (MQ=255)

                                                        ttATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGc                                                                            <  1:912989/140‑1 (MQ=255)

                                                         tataGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGcc                                                                           >  1:576372/1‑140 (MQ=255)

                                                         tataGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGcc                                                                           >  2:1305869/1‑140 (MQ=255)

                                                          ataGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCg                                                                          >  1:1540077/1‑140 (MQ=255)

                                                           taGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGc                                                                         >  1:740795/1‑140 (MQ=255)

                                                                 tGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATg                                                                   >  1:965538/1‑140 (MQ=255)

                                                                 tGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATg                                                                   >  2:1279812/1‑140 (MQ=255)

                                                                  ggTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGc                                                                  >  1:974945/1‑140 (MQ=255)

                                                                   gTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGcc                                                                 >  1:276271/1‑140 (MQ=255)

                                                                   gTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGcc                                                                 <  1:962766/140‑1 (MQ=255)

                                                                   gTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGcc                                                                 >  1:706829/1‑140 (MQ=255)

                                                                   gTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGcc                                                                 <  2:15120/140‑1 (MQ=255)

                                                                   gTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGcc                                                                 >  1:202511/1‑140 (MQ=255)

                                                                       gTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACg                                                             <  1:1047712/140‑1 (MQ=255)

                                                                       gTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACg                                                             <  2:921629/140‑1 (MQ=255)

                                                                       gTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACg                                                             <  1:349704/140‑1 (MQ=255)

                                                                        tCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGc                                                            >  2:361436/1‑140 (MQ=255)

                                                                             agcTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCACTTTATGCCAACGCTGTgg                                                       >  1:1186351/1‑140 (MQ=255)

                                                                              gcTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGc                                                      <  1:1218991/140‑1 (MQ=255)

                                                                              gcTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGc                                                      <  2:125745/140‑1 (MQ=255)

                                                                                tGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTg                                                    <  1:550328/140‑1 (MQ=255)

                                                                                  gggTTGGATCAGCCGCTGTATCTCCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGAc                                                  <  2:1510817/140‑1 (MQ=255)

                                                                                   ggTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGAcc                                                 <  1:1180483/140‑1 (MQ=255)

                                                                                       ggATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATaa                                             <  2:571830/140‑1 (MQ=255)

                                                                                       ggATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATaa                                             <  2:959434/140‑1 (MQ=255)

                                                                                       ggATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATaa                                             <  1:1009900/140‑1 (MQ=255)

                                                                                       ggATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATaa                                             <  2:1026074/140‑1 (MQ=255)

                                                                                       ggATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATaa                                             <  1:1305869/140‑1 (MQ=255)

                                                                                        gATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAAc                                            <  2:916173/140‑1 (MQ=255)

                                                                                         aTCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCt                                                           >  2:473105/1‑124 (MQ=255)

                                                                                             gCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTa                                       >  1:229519/1‑140 (MQ=255)

                                                                                             gCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTa                                       >  2:362413/1‑140 (MQ=255)

                                                                                                  tGTATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTc                                  <  2:1540077/140‑1 (MQ=255)

                                                                                                    tATCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTg                                <  1:259208/140‑1 (MQ=255)

                                                                                                      tCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTggg                              <  2:693415/140‑1 (MQ=255)

                                                                                                      tCACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTggg                              <  2:229519/140‑1 (MQ=255)

                                                                                                       cACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAAc                                            >  2:1305642/1‑125 (MQ=255)

                                                                                                       cACCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAAc                                            <  1:1305642/125‑1 (MQ=255)

                                                                                                        aCCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCg                            >  2:51406/1‑140 (MQ=255)

                                                                                                        aCCAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCg                            <  2:706829/140‑1 (MQ=255)

                                                                                                         ccAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCTTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCgg                           <  2:1386010/140‑1 (MQ=255)

                                                                                                         ccAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCgg                           <  1:1338442/140‑1 (MQ=255)

                                                                                                         ccAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCgg                           <  1:1107921/140‑1 (MQ=255)

                                                                                                          cAGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGt                          <  2:798264/140‑1 (MQ=255)

                                                                                                           aGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGtt                         <  2:965538/140‑1 (MQ=255)

                                                                                                           aGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGtt                         <  1:1355152/140‑1 (MQ=255)

                                                                                                           aGTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGtt                         >  2:1294945/1‑140 (MQ=255)

                                                                                                            gTTCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTta                        >  1:1206011/1‑140 (MQ=255)

                                                                                                              tCTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTtata                      >  2:370144/1‑140 (MQ=255)

                                                                                                               cTGGCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTatat                     >  1:1433068/1‑140 (MQ=255)

                                                                                                                 ggCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATAttt                   >  1:150266/1‑140 (MQ=255)

                                                                                                                  gCACTATATCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTg                  >  2:235779/1‑140 (MQ=255)

                                                                                                                      tataTCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTAt              <  1:1378726/140‑1 (MQ=255)

                                                                                                                       atatCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATg             >  1:188821/1‑140 (MQ=255)

                                                                                                                       atatCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATg             >  2:711434/1‑140 (MQ=255)

                                                                                                                       atatCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATg             >  1:91187/1‑140 (MQ=255)

                                                                                                                       atatCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATg             >  2:542998/1‑140 (MQ=255)

                                                                                                                       atatCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATg             >  2:625038/1‑140 (MQ=255)

                                                                                                                       atatCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATg             <  2:658658/140‑1 (MQ=255)

                                                                                                                         atCAGCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATggc           >  1:1141657/1‑140 (MQ=255)

                                                                                                                             gCAATGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATggcgggg       >  2:360013/1‑138 (MQ=255)

                                                                                                                                aTGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGa    >  2:1550550/1‑140 (MQ=255)

                                                                                                                                aTGCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGa    >  1:696419/1‑140 (MQ=255)

                                                                                                                                  gCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAt  >  1:1464081/1‑140 (MQ=255)

                                                                                                                                  gCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAt  >  1:345064/1‑140 (MQ=255)

                                                                                                                                  gCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAt  >  1:420052/1‑140 (MQ=255)

                                                                                                                                  gCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAt  >  2:1294016/1‑140 (MQ=255)

                                                                                                                                  gCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAt  >  2:1268859/1‑140 (MQ=255)

                                                                                                                                  gCTGCGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAt  >  1:130252/1‑140 (MQ=255)

TATGCTGCCCGGCGATCCGGCGCGATTGATTGCCGGGCCCGAAGCTGATGCGCAGGTTATAGAACTGGTGCGTCAGCAGCTGGGGTTGGATCAGCCGCTGTATCACCAGTTCTGGCACTATATCAGCAATGCTGTGCAGGGGGATTTTGGCCTGTCGATGGTGTCGCGTCGTCCGGTTGCCGATGAGATTGCCAGCCGCTTTATGCCAACGCTGTGGCTGACCATAACCAGTATGGTCTGGGCGGTTATATTTGGTATGGCGGCGGGAAT  >  NC_000913/871050‑871319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A