Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,421,048	T→C	V143A (GTA→GCA)	yfcG →	disulfide reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,421,048	0	T	C	100.0%	323.8 / NA	85	V143A (GTA→GCA)	yfcG	disulfide reductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (54/31); total (54/31)

CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCGGCAGTCAAGAA  >  NC_000913/2420915‑2421183

cAGTGGTTATTCTGGCGGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGaa                                                                                                                                   >  2:794481/1‑140 (MQ=255)

  gTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACa                                                                                                                                 >  1:209203/1‑140 (MQ=255)

   tGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACaa                                                                                                                                >  2:876916/1‑140 (MQ=255)

     gTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGc                                                                                                                              >  2:642913/1‑140 (MQ=255)

     gTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGc                                                                                                                              >  2:748912/1‑140 (MQ=255)

     gTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGc                                                                                                                              >  1:14686/1‑140 (MQ=255)

     gTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGc                                                                                                                              >  2:755147/1‑140 (MQ=255)

        aTTCTGGCAGGTAGGCGGACTGGGGCCGTTGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATCGACCCTAATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGc                                                                                                                           >  2:1411536/1‑140 (MQ=255)

        aTTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGc                                                                                                                           >  2:540512/1‑140 (MQ=255)

             ggCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGaa                                                                                                                      >  2:1382813/1‑140 (MQ=255)

               cAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGaaaa                                                                                                                    >  1:1124451/1‑140 (MQ=255)

               cAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGaaaa                                                                                                                    >  1:1042150/1‑140 (MQ=255)

                   tAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCg                                                                                                                >  2:1366551/1‑140 (MQ=255)

                     ggCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGcc                                                                                                              <  1:1220672/140‑1 (MQ=255)

                     ggCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGcc                                                                                                              <  2:221907/140‑1 (MQ=255)

                        ggACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCctg                                                                                                           >  1:362399/1‑140 (MQ=255)

                               ggCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGa                                                                                                    >  1:263439/1‑140 (MQ=255)

                                gCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAg                                                                                                   <  2:1157246/140‑1 (MQ=255)

                                  cGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGc                                                                                                 >  2:243216/1‑140 (MQ=255)

                                   gATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAATGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCg                                                                                                <  2:1346407/140‑1 (MQ=255)

                                    aTGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCga                                                                                               >  2:67747/1‑140 (MQ=255)

                                    aTGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCga                                                                                               >  2:592613/1‑140 (MQ=255)

                                    aTGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCga                                                                                               >  2:1445248/1‑140 (MQ=255)

                                    aTGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCga                                                                                               >  1:114350/1‑140 (MQ=255)

                                     tGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCgag                                                                                              <  1:592858/140‑1 (MQ=255)

                                     tGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCgag                                                                                              >  2:662464/1‑140 (MQ=255)

                                     tGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCgag                                                                                              <  1:1366551/140‑1 (MQ=255)

                                     tGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCgag                                                                                              <  1:816395/140‑1 (MQ=255)

                                     tGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCgag                                                                                              <  1:794481/140‑1 (MQ=255)

                                          gggCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTa                                                                                         >  2:484080/1‑140 (MQ=255)

                                                  tcatcaTTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTg                                                                                 <  2:864785/140‑1 (MQ=255)

                                                  tcatcaTTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTCGCTGGGAGGCGAGAACTACAGCATTg                                                                                 <  2:1317067/140‑1 (MQ=255)

                                                     tcatTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCgg                                                                              <  2:362399/140‑1 (MQ=255)

                                                               cACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctg                                                                    <  1:876916/140‑1 (MQ=255)

                                                                  gCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgctg                                                                 >  1:426827/1‑140 (MQ=255)

                                                                  gCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCctgctg                                                                 >  2:1421358/1‑140 (MQ=255)

                                                                     gCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATAtt                                                                         <  1:1265849/129‑1 (MQ=255)

                                                                     gCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATAtt                                                                         >  2:1265849/1‑129 (MQ=255)

                                                                     gCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGcc                                                              <  2:669032/140‑1 (MQ=255)

                                                                      ccccccAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCg                                                             <  1:808059/140‑1 (MQ=255)

                                                                      ccccccAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCg                                                             >  1:756246/1‑140 (MQ=255)

                                                                                cATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATg                                                   >  1:1409463/1‑140 (MQ=255)

                                                                                 aTTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGc                                                  <  2:817149/140‑1 (MQ=255)

                                                                                  ttCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGcc                                                 >  1:173404/1‑140 (MQ=255)

                                                                                   tCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt                                                >  2:985783/1‑140 (MQ=255)

                                                                                   tCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt                                                >  2:864789/1‑140 (MQ=255)

                                                                                   tCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt                                                >  2:1587408/1‑140 (MQ=255)

                                                                                   tCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt                                                >  2:672581/1‑140 (MQ=255)

                                                                                   tCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt                                                >  2:235084/1‑140 (MQ=255)

                                                                                   tCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCt                                                >  1:731341/1‑140 (MQ=255)

                                                                                      ttACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGa                                             >  2:344010/1‑140 (MQ=255)

                                                                                      ttACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGa                                             <  1:363221/140‑1 (MQ=255)

                                                                                       tACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGAc                                            >  2:357571/1‑140 (MQ=255)

                                                                                              ttGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAg                                     >  1:247084/1‑140 (MQ=255)

                                                                                              ttGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAg                                     >  1:781300/1‑140 (MQ=255)

                                                                                              ttGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAg                                     >  2:1485744/1‑140 (MQ=255)

                                                                                               tGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGc                                    >  1:847648/1‑140 (MQ=255)

                                                                                                  aCGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGaa                                 <  2:1551729/140‑1 (MQ=255)

                                                                                                   cGTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAAt                                <  2:805439/140‑1 (MQ=255)

                                                                                                   cGTTATCAGGTTGAAACTCAGCGTCCTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAAt                                <  2:609710/140‑1 (MQ=255)

                                                                                                    gTTATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAAtt                               >  1:45115/1‑140 (MQ=255)

                                                                                                      tATCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGa                             >  2:1365810/1‑140 (MQ=255)

                                                                                                       aTCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGAc                            <  2:1124451/140‑1 (MQ=255)

                                                                                                       aTCAGGTTGAAACTCAGCGTCTTTACCATCCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGCTAATGCCTGGACTCGCCAGCGAATTGAc                            >  2:385784/1‑140 (MQ=255)

                                                                                                        tCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGAcc                           >  2:531659/1‑140 (MQ=255)

                                                                                                        tCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGAcc                           >  1:737814/1‑140 (MQ=255)

                                                                                                        tCAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGAcc                           <  2:173404/140‑1 (MQ=255)

                                                                                                         cAGGTTGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCt                          <  2:13145/140‑1 (MQ=255)

                                                                                                             ttGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCa                      >  2:370201/1‑140 (MQ=255)

                                                                                                             ttGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCa                      <  1:592613/140‑1 (MQ=255)

                                                                                                             ttGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCa                      <  2:1191353/140‑1 (MQ=255)

                                                                                                             ttGAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCa                      <  1:642913/140‑1 (MQ=255)

                                                                                                               gAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAAt                    >  2:1327114/1‑140 (MQ=255)

                                                                                                               gAAACTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAAt                    >  1:807895/1‑140 (MQ=255)

                                                                                                                aaaCTCAGCGTCTTTACGATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATg                   >  1:737910/1‑140 (MQ=255)

                                                                                                                aaaCTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGCACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCaacg                   >  2:1019432/1‑138 (MQ=255)

                                                                                                                aaaCTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATg                   >  1:1481389/1‑140 (MQ=255)

                                                                                                                aaaCTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATg                   >  1:1445231/1‑140 (MQ=255)

                                                                                                                  aCTCAGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTa                 >  2:101098/1‑140 (MQ=255)

                                                                                                                      aGCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCg             >  1:484108/1‑140 (MQ=255)

                                                                                                                       gCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCgg            <  1:531659/140‑1 (MQ=255)

                                                                                                                       gCGTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCgg            <  1:1421358/140‑1 (MQ=255)

                                                                                                                         gTCTTTACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCGGCa          <  1:67747/140‑1 (MQ=255)

                                                                                                                            tttACCATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCGGCAGTc       <  2:1042150/140‑1 (MQ=255)

                                                                                                                                 cATGCACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCGGCAGTCAAGaa  <  2:114350/140‑1 (MQ=255)

CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGGGAGGCGAGAACTACAGCATTGCGGATATTGCCTGCTGGCCGTGGGTTAATGCCTGGACTCGCCAGCGAATTGACCTAGCAATGTATCCGGCAGTCAAGAA  >  NC_000913/2420915‑2421183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A