Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 108 95.2 3177646 99.2% 3152224 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,555,207 A→G intergenic (‑25/+21) eutR ← / ← eutK putative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,555,2070AG100.0% 304.6 / NA 81intergenic (‑25/+21)eutR/eutKputative AraC‑type transcriptional regulator EutR/putative structural protein, ethanolamine utilization microcompartment
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (44/37);  total (44/37)

TGTCTGTCGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGCAGC  >  NC_000913/2555072‑2555338
                                                                                                                                       |                                                                                                                                   
tgtctgtcGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCAcc                                                                                                                                 <  2:1472113/140‑1 (MQ=255)
 gtctgtcGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCAccc                                                                                                                                >  2:325107/1‑140 (MQ=255)
  tctgtcGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCg                                                                                                                               >  2:835038/1‑140 (MQ=255)
    tgtcGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGc                                                                                                                             >  1:752183/1‑140 (MQ=255)
     gtcGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCa                                                                                                                            <  1:993324/140‑1 (MQ=255)
      tcGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCAc                                                                                                                           >  1:1065382/1‑140 (MQ=255)
      tcGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCAc                                                                                                                           >  2:1378665/1‑140 (MQ=255)
          tgatgaACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTcc                                                                                                                       <  1:1433058/140‑1 (MQ=255)
            atgaACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGa                                                                                                                     <  2:866817/140‑1 (MQ=255)
            atgaACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGa                                                                                                                     <  1:170195/140‑1 (MQ=255)
            atgaACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTCTTGTAGGGCACCCGGCACCTCCGa                                                                                                                     <  2:1174956/140‑1 (MQ=255)
                    tATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTaa                                                                                                             >  2:151285/1‑140 (MQ=255)
                     aTCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAAt                                                                                                            <  2:1378145/140‑1 (MQ=255)
                     aTCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAAt                                                                                                            <  1:1482645/140‑1 (MQ=255)
                      tCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGTAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATg                                                                                                           >  2:945121/1‑140 (MQ=255)
                      tCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATg                                                                                                           <  2:821866/140‑1 (MQ=255)
                      tCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATg                                                                                                           >  2:1489091/1‑140 (MQ=255)
                           ttCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCt                                                                                                      >  2:814940/1‑140 (MQ=255)
                           ttCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCt                                                                                                      <  1:113456/140‑1 (MQ=255)
                           ttCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCt                                                                                                      >  1:168193/1‑140 (MQ=255)
                           ttCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCt                                                                                                      <  1:520935/140‑1 (MQ=255)
                            tCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCtt                                                                                                     >  1:43951/1‑140 (MQ=255)
                            tCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCtt                                                                                                     >  2:109116/1‑140 (MQ=255)
                            tCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACAGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCtt                                                                                                     >  2:368189/1‑140 (MQ=255)
                             cGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTg                                                                                                    <  2:823314/140‑1 (MQ=255)
                              gACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTga                                                                                                   <  2:1360613/140‑1 (MQ=255)
                               aCCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTgag                                                                                                  >  2:1369110/1‑140 (MQ=255)
                                ccTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGTAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTgaga                                                                                                 <  1:945121/140‑1 (MQ=255)
                                ccTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTgaga                                                                                                 <  2:92672/140‑1 (MQ=255)
                                ccTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTgaga                                                                                                 >  1:1381585/1‑140 (MQ=255)
                                  ttCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACg                                                                                               <  1:531364/140‑1 (MQ=255)
                                    cGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGAt                                                                                             >  2:292154/1‑140 (MQ=255)
                                       cGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAAc                                                                                          >  1:832790/1‑140 (MQ=255)
                                       cGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCCCCGACAGGTTAATGGGGCTTGAGACGATAAc                                                                                          <  1:325107/140‑1 (MQ=255)
                                         tGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGa                                                                                        <  2:260145/140‑1 (MQ=255)
                                               tCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTg                                                                                  <  2:1321955/140‑1 (MQ=255)
                                               tCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTg                                                                                  <  1:590072/140‑1 (MQ=255)
                                                 aGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCg                                                                                <  1:15047/140‑1 (MQ=255)
                                                        cGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGt                                                                         >  2:1487750/1‑140 (MQ=255)
                                                        cGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGt                                                                         >  2:415804/1‑140 (MQ=255)
                                                             aaGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGt                                                                    <  2:168193/140‑1 (MQ=255)
                                                             aaGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGt                                                                    <  1:556032/140‑1 (MQ=255)
                                                                  ttCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCgg                                                               <  1:1432437/140‑1 (MQ=255)
                                                                     aTGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAg                                                            >  2:1177795/1‑140 (MQ=255)
                                                                          aaaGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAag                                                       <  2:1381585/140‑1 (MQ=255)
                                                                          aaaGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAag                                                       >  2:487056/1‑140 (MQ=255)
                                                                           aaGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAaga                                                      >  1:1538583/1‑140 (MQ=255)
                                                                            aGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAagag                                                     <  2:1209714/140‑1 (MQ=255)
                                                                            aGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAagag                                                     <  1:499671/140‑1 (MQ=255)
                                                                                ggTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGGGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGt                                                 >  1:1481845/1‑140 (MQ=255)
                                                                                 gTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGtt                                                >  2:1389749/1‑140 (MQ=255)
                                                                                 gTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGtt                                                >  1:1044466/1‑140 (MQ=255)
                                                                                 gTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGtt                                                >  1:638576/1‑140 (MQ=255)
                                                                                 gTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGtt                                                >  1:1561999/1‑140 (MQ=255)
                                                                                 gTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGtt                                                >  1:1488088/1‑140 (MQ=255)
                                                                                  tGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTc                                               >  1:1027845/1‑140 (MQ=255)
                                                                                  tGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTc                                               >  1:463132/1‑140 (MQ=255)
                                                                                  tGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTc                                               >  1:278063/1‑140 (MQ=255)
                                                                                      aaTTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAgc                                           <  1:350558/140‑1 (MQ=255)
                                                                                            cTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCAttt                                     >  2:276432/1‑140 (MQ=255)
                                                                                               tACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTg                                  >  1:852369/1‑140 (MQ=255)
                                                                                                      cTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCttttt                           >  1:10447/1‑140 (MQ=255)
                                                                                                      cTTTTTCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGACttttt                           >  2:1148527/1‑140 (MQ=255)
                                                                                                         tttCATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCa                        >  2:101256/1‑140 (MQ=255)
                                                                                                            cATGATGTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCg                     <  1:151285/140‑1 (MQ=255)
                                                                                                              tgatgTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCt                               >  2:96620/1‑128 (MQ=255)
                                                                                                              tgatgTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCt                               <  1:96620/128‑1 (MQ=255)
                                                                                                              tgatgTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGgc                   >  2:1147520/1‑140 (MQ=255)
                                                                                                              tgatgTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGgc                   >  1:1048772/1‑140 (MQ=255)
                                                                                                                  gTTAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGgccagc               <  2:638576/140‑1 (MQ=255)
                                                                                                                   ttAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGgccagcc              <  2:752183/140‑1 (MQ=255)
                                                                                                                   ttAATGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGgccagcc              >  2:774661/1‑140 (MQ=255)
                                                                                                                       tGCCGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAg          <  1:1369110/140‑1 (MQ=255)
                                                                                                                          cGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTgg       <  2:4226/140‑1 (MQ=255)
                                                                                                                          cGGGTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTgg       <  1:1378665/140‑1 (MQ=255)
                                                                                                                           gggTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTggg      >  2:1016436/1‑140 (MQ=255)
                                                                                                                           gggTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTggg      >  2:1529330/1‑140 (MQ=255)
                                                                                                                            ggTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGc     <  2:438721/140‑1 (MQ=255)
                                                                                                                            ggTGTTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGc     >  1:503143/1‑140 (MQ=255)
                                                                                                                             gtgtTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGCa    >  1:567564/1‑140 (MQ=255)
                                                                                                                             gtgtTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGCa    >  1:1364067/1‑140 (MQ=255)
                                                                                                                             gtgtTGTAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGCa    >  1:1242963/1‑140 (MQ=255)
                                                                                                                               gttgtAGGGCACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGCAGc  <  2:832790/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                   
TGTCTGTCGTTGATGAACATTATCCACTTCGACCTTCGGCGTGAGCTTCAGGTTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCCAGCGGCCAGCCAAAGTGGGCAGC  >  NC_000913/2555072‑2555338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A