Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,800,662	A→G	intergenic (+187/‑61)	ygaM → / → nrdH	DUF883 domain‑containing protein YgaM/glutaredoxin‑like protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,800,662	0	A	G	100.0%	294.2 / NA	77	intergenic (+187/‑61)	ygaM/nrdH	DUF883 domain‑containing protein YgaM/glutaredoxin‑like protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (48/29); total (48/29)

CTTTTTGCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACAGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAACCGGGG  >  NC_000913/2800531‑2800796

cTTTTTGCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACa                                                                                                                                >  1:1352256/1‑140 (MQ=255)

   tttGCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAAcc                                                                                                                             <  1:1107188/140‑1 (MQ=255)

     tGCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCg                                                                                                                           <  2:1495217/140‑1 (MQ=255)

     tGCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCg                                                                                                                           <  2:1272228/140‑1 (MQ=255)

     tGCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCg                                                                                                                           <  1:1485838/140‑1 (MQ=255)

      gCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGa                                                                                                                          <  1:91479/140‑1 (MQ=255)

          ggTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGAcgcg                                                                                                                      <  2:961107/140‑1 (MQ=255)

                    aaaaaTCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATcgcg                                                                                                            <  2:253003/140‑1 (MQ=255)

                     aaaaTCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCgcgc                                                                                                           <  2:334169/140‑1 (MQ=255)

                                      tCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTaaa                                                                                          >  2:898360/1‑140 (MQ=255)

                                         cGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACgg                                                                                       >  1:433284/1‑140 (MQ=255)

                                              atatCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATa                                                                                  >  2:1486925/1‑140 (MQ=255)

                                                    aGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATc                                                                            >  1:1066780/1‑140 (MQ=255)

                                                    aGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATc                                                                            <  2:1217898/140‑1 (MQ=255)

                                                      ggTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCAt                                                                          >  1:1364080/1‑140 (MQ=255)

                                                      ggTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCAt                                                                          <  1:707039/140‑1 (MQ=255)

                                                      ggTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCAt                                                                          >  1:1149966/1‑140 (MQ=255)

                                                         aaTTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATgcg                                                                       <  1:1281359/140‑1 (MQ=255)

                                                         aaTTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATgcg                                                                       <  2:1504680/140‑1 (MQ=255)

                                                         aaTTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATgcg                                                                       <  2:46532/140‑1 (MQ=255)

                                                           tttCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCa                                                                     <  1:1258586/140‑1 (MQ=255)

                                                           tttCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCa                                                                     <  2:737021/140‑1 (MQ=255)

                                                             tCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCAtt                                                                   <  2:1166929/140‑1 (MQ=255)

                                                                aCCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACt                                                                >  1:1108243/1‑140 (MQ=255)

                                                                   aCTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTAtt                                                             <  2:551283/140‑1 (MQ=255)

                                                                    cTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTAttt                                                            >  1:439507/1‑140 (MQ=255)

                                                                     tATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTa                                                           <  2:895114/140‑1 (MQ=255)

                                                                            tatataTTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGt                                                    <  1:898360/140‑1 (MQ=255)

                                                                              tatatTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTGGTaa                                                  <  1:86889/140‑1 (MQ=255)

                                                                              tatatTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTaa                                                  <  2:682513/140‑1 (MQ=255)

                                                                               atatTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAAc                                                 >  2:1511118/1‑140 (MQ=255)

                                                                               atatTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAAc                                                 >  2:258037/1‑140 (MQ=255)

                                                                               atatTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAAc                                                 >  2:871080/1‑140 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTCTCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTaca                                                         <  2:1228696/128‑1 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTaca                                                         >  1:1228696/1‑128 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGAtt                                             >  2:1510752/1‑140 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGAtt                                             >  2:855389/1‑140 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGAtt                                             >  2:1454653/1‑140 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGAtt                                             <  1:107342/140‑1 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGAtt                                             <  1:1030140/140‑1 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGAtt                                             >  1:141852/1‑140 (MQ=255)

                                                                                   tgtgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGAtt                                             >  1:631939/1‑140 (MQ=255)

                                                                                     tgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGc                                           >  1:1075894/1‑140 (MQ=255)

                                                                                     tgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGc                                           >  1:1212063/1‑140 (MQ=255)

                                                                                     tgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGc                                           >  2:409763/1‑140 (MQ=255)

                                                                                     tgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGc                                           >  1:668141/1‑140 (MQ=255)

                                                                                     tgtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGc                                           >  1:312795/1‑140 (MQ=255)

                                                                                      gtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCg                                          >  2:32485/1‑140 (MQ=255)

                                                                                      gtgGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCg                                          >  2:661945/1‑140 (MQ=255)

                                                                                        ggTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGtt                                        >  1:1584203/1‑140 (MQ=255)

                                                                                          ttgtttCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGATGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCCTGCGCATTACTATTTACACTCGTAACGATTGCGTTCa                                      >  2:698364/6‑140 (MQ=255)

                                                                                          ttGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCa                                      >  1:1192876/1‑140 (MQ=255)

                                                                                          ttGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCa                                      >  1:317295/1‑140 (MQ=255)

                                                                                          ttGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCa                                      >  1:1148029/1‑140 (MQ=255)

                                                                                          ttGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCa                                      >  1:1579099/1‑140 (MQ=255)

                                                                                          ttGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCa                                      >  1:719423/1‑140 (MQ=255)

                                                                                           tGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAg                                     >  1:442319/1‑140 (MQ=255)

                                                                                               tCTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTgcc                                 <  1:802361/140‑1 (MQ=255)

                                                                                                cTTTTTTCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTgcca                                <  1:718246/140‑1 (MQ=255)

                                                                                                  tttttCAACTACATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTgccacg                              <  1:321581/140‑1 (MQ=255)

                                                                                                    tttCAACTACATCTAGTATCTCTGTATCAACGGAGAGACACCCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACGCGTAACGATTGCGTTCAGTgccacgcc                            <  1:1366460/140‑1 (MQ=255)

                                                                                                             cATCTAGTATCTCTGTATCAACGGTGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACgg                   >  2:1164766/1‑140 (MQ=255)

                                                                                                             cATCTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACgg                   >  1:1193402/1‑140 (MQ=255)

                                                                                                                cTAGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCg                >  2:1484624/1‑140 (MQ=255)

                                                                                                                  aGTATCTCTGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGAt              >  1:1385785/1‑140 (MQ=255)

                                                                                                                     aTCTCTGTATCAACGGAGAGACAACCCGACCCGTATCATCGCGCCGTATCTTCATTTTCAACGGCAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGGTGGa           >  2:1457339/1‑140 (MQ=255)

                                                                                                                       ctctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGaaa         >  1:936748/1‑140 (MQ=255)

                                                                                                                       ctctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGaaa         >  1:1553997/1‑140 (MQ=255)

                                                                                                                        tctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGaaaa        >  2:938760/1‑140 (MQ=255)

                                                                                                                        tctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGaaaa        >  1:115581/1‑140 (MQ=255)

                                                                                                                        tctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGaaaa        >  1:406020/1‑140 (MQ=255)

                                                                                                                         ctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGc                 >  1:715864/1‑130 (MQ=255)

                                                                                                                         ctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGc                 <  2:715864/130‑1 (MQ=255)

                                                                                                                         ctGTATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAAc       >  2:293706/1‑140 (MQ=255)

                                                                                                                            tATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAACCgg    >  2:1199791/1‑140 (MQ=255)

                                                                                                                            tATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAACCgg    >  2:1501377/1‑140 (MQ=255)

                                                                                                                            tATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAACCgg    >  1:47632/1‑140 (MQ=255)

                                                                                                                            tATCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAACCgg    >  1:406761/1‑140 (MQ=255)

                                                                                                                              tCAACGGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAACCgggg  >  2:201353/1‑140 (MQ=255)

CTTTTTGCCTGGTGAATCACAAAAATCCCCCTACCCCGTCACGCTCATATCCAGGGTAATTTCGACCACTATTTGCTATATATTGTGTGGTTGAATCTTTTTTCAACTACATCTAGTATCTCTGTATCAACAGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCATGCGCATTACTATTTACACTCGTAACGATTGCGTTCAGTGCCACGCCACCAAACGGGCGATGGAAAACCGGGG  >  NC_000913/2800531‑2800796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A