Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A25 F60 I1 R1 14 108.0 3679756 98.7% 3631919 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,292,906 T→C K6R (AAA→AGA)  hns ← DNA‑binding transcriptional dual regulator H‑NS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,292,9060TC100.0% 248.6 / NA 64K6R (AAA→AGA) hnsDNA‑binding transcriptional dual regulator H‑NS
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (21/43);  total (21/43)

CAACTTCAGCAGCAGCCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGC  >  NC_000913/1292769‑1293040
                                                                                                                                         |                                                                                                                                      
cAACTTCAGCAGCAGCCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTa                                                                                                                                      >  2:703576/1‑140 (MQ=255)
cAACTTCAGCAGCAGCCGCGC‑TTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTaa                                                                                                                                     <  2:542297/140‑1 (MQ=255)
      cagcagcagCCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCt                                                                                                                                <  2:206723/140‑1 (MQ=255)
      cagcagcagCCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCt                                                                                                                                <  2:1459762/140‑1 (MQ=255)
        gcagcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTc                                                                                                                              <  2:1622476/140‑1 (MQ=255)
        gcagcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTc                                                                                                                              >  2:1066120/1‑140 (MQ=255)
        gcagcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTc                                                                                                                              >  1:1709151/1‑140 (MQ=255)
         cagcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCg                                                                                                                             <  1:423868/140‑1 (MQ=255)
         cagcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCg                                                                                                                             <  1:830247/140‑1 (MQ=255)
          agcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGc                                                                                                                            >  2:304416/1‑140 (MQ=255)
           gcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCt                                                                                                                           <  2:720824/140‑1 (MQ=255)
           gcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCt                                                                                                                           <  1:1677952/140‑1 (MQ=255)
           gcagcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCt                                                                                                                           <  1:1503428/140‑1 (MQ=255)
             agcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCa                                                                                                                         <  2:1709151/140‑1 (MQ=255)
             agcCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCa                                                                                                                         >  1:13228/1‑140 (MQ=255)
                   gcTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTgtag                                                                                                                   >  1:1594899/1‑140 (MQ=255)
                         ttcttcGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAAtct                                                                                                             <  1:1260768/140‑1 (MQ=255)
                          tcttcGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAAtctc                                                                                                            <  2:1078586/140‑1 (MQ=255)
                          tcttcGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGGACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAAtctc                                                                                                            <  1:1397767/140‑1 (MQ=255)
                             tcGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCAt                                                                                                                        <  1:1086723/125‑1 (MQ=255)
                             tcGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCAt                                                                                                                        >  2:1086723/1‑125 (MQ=255)
                              cgcgACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAAc                                                                                                        <  2:1448820/140‑1 (MQ=255)
                               gcgACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACt                                                                                                       >  2:361463/1‑140 (MQ=255)
                                 gACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTta                                                                                                     <  1:361463/140‑1 (MQ=255)
                                     ttcgttAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATAtt                                                                                                 >  1:667067/1‑140 (MQ=255)
                                      tcgttAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTg                                                                                                >  2:74188/1‑140 (MQ=255)
                                        gttAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTggg                                                                                              <  2:502183/140‑1 (MQ=255)
                                             caacaacTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGggtggt                                                                                         >  2:604275/1‑140 (MQ=255)
                                                caacTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTggg                                                                                              <  2:1595628/132‑1 (MQ=255)
                                                caacTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTggg                                                                                              >  1:1595628/1‑132 (MQ=255)
                                                caacTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTttg                                                                                      >  1:1665481/1‑140 (MQ=255)
                                                  acTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTttgtt                                                                                    <  1:375870/140‑1 (MQ=255)
                                                  acTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTttgtt                                                                                    <  1:1408842/140‑1 (MQ=255)
                                                  acTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTttgtt                                                                                    <  2:667067/140‑1 (MQ=255)
                                                  acTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTttgtt                                                                                    <  2:1261991/140‑1 (MQ=255)
                                                    ttCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGa                                                                                  <  1:1066120/140‑1 (MQ=255)
                                                    ttCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGa                                                                                  <  2:104684/140‑1 (MQ=255)
                                                     tCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAg                                                                                 <  2:1594899/140‑1 (MQ=255)
                                                                   cATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGcc                                                                   <  1:1728857/140‑1 (MQ=255)
                                                                   cATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGcc                                                                   <  1:245713/140‑1 (MQ=255)
                                                                   cATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGcc                                                                   <  2:1665481/140‑1 (MQ=255)
                                                                        cttcCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTaaa                                                              <  1:1062327/140‑1 (MQ=255)
                                                                             aGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAg                                                         <  2:1354599/140‑1 (MQ=255)
                                                                                  ttCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTtgtg                                                    <  2:802704/140‑1 (MQ=255)
                                                                                     aaGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCaa                                                 <  1:703576/140‑1 (MQ=255)
                                                                                           aCATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCa                                           >  1:405121/1‑140 (MQ=255)
                                                                                            cATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAg                                          <  1:1252507/140‑1 (MQ=255)
                                                                                               tctcTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCa                                                  >  2:1837807/1‑129 (MQ=255)
                                                                                               tctcTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCa                                                  <  1:1837807/129‑1 (MQ=255)
                                                                                                     gCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAg                                 <  2:405121/140‑1 (MQ=255)
                                                                                                         gcgcACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAAt                             >  1:688902/1‑140 (MQ=255)
                                                                                                         gcgcACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAAt                             >  1:1379517/1‑140 (MQ=255)
                                                                                                            cACGAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCa                          <  2:688902/140‑1 (MQ=255)
                                                                                                               gAAGAGTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCaaaa                       <  2:13228/140‑1 (MQ=255)
                                                                                                                 agagTACGGATGTTGTTCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAAtt                     <  1:1172395/140‑1 (MQ=255)
                                                                                                                             ttgttCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAtttt         >  1:321543/1‑140 (MQ=255)
                                                                                                                             ttgttCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAtttt         >  2:1083783/1‑140 (MQ=255)
                                                                                                                               gttCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgt       >  1:516603/1‑140 (MQ=255)
                                                                                                                               gttCAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgt       >  1:982213/1‑140 (MQ=255)
                                                                                                                                  cAGAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgcc    <  2:979719/140‑1 (MQ=255)
                                                                                                                                    gAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccgc  <  2:1700181/140‑1 (MQ=255)
                                                                                                                                    gAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccgc  <  1:1083783/140‑1 (MQ=255)
                                                                                                                                    gAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccgc  <  2:815910/140‑1 (MQ=255)
                                                                                                                                    gAATTCTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccgc  <  2:927936/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
CAACTTCAGCAGCAGCCGCGCTTTCTTCTTCGCGACGTTCGTTAACAACAACTTCTAATTTTTCCAGCATTTCTTCCAGCGTTTCAAGTGTACATTCTCTTGCCTGCGCACGAAGAGTACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGC  >  NC_000913/1292769‑1293040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A