Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A44 F60 I1 R1 17 93.7 3192976 98.9% 3157853 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,531,140 IS2 (+) +5 bp coding (508‑512/1122 nt) sgcX ← KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4498181 =NA (NA)131 (1.400) 68/274 0.1 99.2% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 = 4531144 1 (0.010)coding (508/1122 nt) sgcX KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain
* ? NC_000913 = 4499511NA (NA)99 (1.060) 59/274 0.2 99.0% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 4531140 = 1 (0.010)coding (512/1122 nt) sgcX KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain

Only 100 of 131 total aligned reads displayed.

TGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4498318‑4498181
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACAGGAAGAATTTA  <  NC_000913/4531144‑4531009
                                                                                                                                                                                                                                                                                  
TGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGC                                                                                                                                        <  1:356097/140‑1
  TGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAA                                                                                                                                      <  1:1553528/140‑1
  TGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAA                                                                                                                                      >  2:375732/1‑140
  TGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAA                                                                                                                                      >  1:1206477/1‑140
  TGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAA                                                                                                                                      >  2:580102/1‑140
   GTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAA                                                                                                                                     <  2:927126/140‑1
    TGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAAC                                                                                                                                    >  2:191740/1‑140
     GGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACG                                                                                                                                   <  2:347049/140‑1
      GTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGA                                                                                                                                  >  1:1512841/1‑140
      GTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGA                                                                                                                                  >  1:382153/1‑140
          GCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTG                                                                                                                              <  1:823020/140‑1
            CGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGT                                                                                                                            <  1:1308022/140‑1
            CGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGT                                                                                                                            >  2:1169931/1‑140
              TCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGT                                                                                                                          >  1:949601/1‑140
              TCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAA                                                                                                                                      >  2:342943/1‑128
              TCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAA                                                                                                                                      <  1:342943/128‑1
               CTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTG                                                                                                                         <  1:1552360/140‑1
                TGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGC                                                                                                                        >  1:1469869/1‑140
                                TAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACG                                                                                                        <  1:796706/140‑1
                                TAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACG                                                                                                        <  1:191740/140‑1
                                TAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACG                                                                                                        >  1:1170278/1‑140
                                TAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACG                                                                                                        <  1:1169931/140‑1
                                 AAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGA                                                                                                       >  2:1052426/1‑140
                                 AAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGA                                                                                                       >  1:683477/1‑140
                                     CATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGT                                                                                                   <  2:1293627/140‑1
                                      ATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTC                                                                                                  >  2:1254543/1‑140
                                          ATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGG                                                                                              <  1:595744/140‑1
                                          ATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGG                                                                                              <  2:1456859/140‑1
                                              TCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGT                                                                                          >  2:646780/1‑140
                                              TCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGG                                                                                              <  2:203980/136‑1
                                              TCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACG                                                                                                        <  1:1121827/126‑1
                                              TCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACG                                                                                                        >  2:1121827/1‑126
                                               CTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTA                                                                                         <  1:658595/140‑1
                                                  TTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTG                                                                                      >  1:681047/1‑140
                                                  TTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTG                                                                                      >  1:582868/1‑140
                                                  TTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTG                                                                                      >  1:1247506/1‑140
                                                         ATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCT                                                                               <  2:961195/140‑1
                                                         ATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCT                                                                               <  2:696638/140‑1
                                                            ACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGG                                                                            >  1:1050568/1‑140
                                                            ACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGG                                                                            >  1:95785/1‑140
                                                            ACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCT                                                                               >  1:497423/1‑137
                                                            ACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCT                                                                               <  2:497423/137‑1
                                                                GTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTAGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTA                                                                        >  2:646688/1‑140
                                                                 TCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAG                                                                       >  1:44348/1‑140
                                                                 TCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAG                                                                       >  1:1274219/1‑140
                                                                 TCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAG                                                                       <  2:683477/140‑1
                                                                   TAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCG                                                                     <  2:638500/140‑1
                                                                         CTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCT                                                               <  2:582868/140‑1
                                                                           AGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             >  2:1569768/1‑140
                                                                           AGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             <  2:1375067/140‑1
                                                                           AGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             <  1:1254543/140‑1
                                                                           AGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             <  1:526085/140‑1
                                                                           AGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGAT                                                                  <  2:367147/135‑1
                                                                           AGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGAT                                                                  >  1:367147/1‑135
                                                                                    ACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTAT                                                    >  2:859880/1‑140
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGA                                                 >  2:948736/1‑140
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGA                                                 >  2:1028986/1‑140
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGA                                                 >  2:1167692/1‑140
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGA                                                 >  1:1438056/1‑140
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTA                                                     >  1:172929/1‑136
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTA                                                     <  2:172929/136‑1
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             <  1:889347/128‑1
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             <  2:1403809/128‑1
                                                                                       ATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             >  1:1403809/1‑128
                                                                                        TCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             <  1:453139/127‑1
                                                                                        TCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTAT                                                             >  2:453139/1‑127
                                                                                         CACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGC                                               >  2:1209821/1‑140
                                                                                         CACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGC                                               >  2:382640/1‑140
                                                                                          ACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCT                                              <  1:772172/140‑1
                                                                                              ATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGAT                                          >  1:1076920/1‑140
                                                                                                TTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATAT                                        <  1:859880/140‑1
                                                                                                    GTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCC                                    >  2:1435081/1‑140
                                                                                                    GTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCC                                    >  1:29778/1‑140
                                                                                                      GATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGT                                  >  1:1416280/1‑140
                                                                                                      GATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGC                                     >  1:545183/1‑137
                                                                                                      GATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCG                                      >  2:1537164/1‑136
                                                                                                      GATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCG                                      <  1:1537164/136‑1
                                                                                                      GATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATG                                                   >  1:338879/1‑123
                                                                                                      GATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATG                                                   <  2:338879/123‑1
                                                                                                      GATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTAT                                                    <  1:1077991/122‑1
                                                                                                        TATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTT                                >  2:1029747/1‑140
                                                                                                        TATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTT                                >  1:1530469/1‑140
                                                                                                         ATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTA                               >  1:795404/1‑140
                                                                                                         ATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTA                               >  1:652802/1‑140
                                                                                                               TGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGT                         >  2:469817/1‑140
                                                                                                               TGTCTGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGT                         <  2:1219374/140‑1
                                                                                                                   TGGAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCT                     >  1:1430399/1‑140
                                                                                                                     GAGATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTC                   <  2:1206477/140‑1
                                                                                                                        ATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGT                >  2:465879/1‑140
                                                                                                                        ATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGT                         >  1:581364/1‑131
                                                                                                                        ATTCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGT                         <  2:581364/131‑1
                                                                                                                          TCAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTAC              <  2:1040007/140‑1
                                                                                                                           CAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACA             >  1:1569706/1‑140
                                                                                                                           CAGGGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACA             >  1:383048/1‑140
                                                                                                                              GGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACAGGA          <  1:948736/140‑1
                                                                                                                              GGGGCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACAGGA          <  2:1354247/140‑1
                                                                                                                                 GCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACAGGAAGA       >  1:414117/1‑140
                                                                                                                                 GCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGT                         <  2:1289562/122‑1
                                                                                                                                 GCCAGTCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGT                         >  1:1289562/1‑122
                                                                                                                                      TCTAGCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACAGGAAGAATTTA  >  1:1304103/1‑140
                                                                                                                                                                                                                                                                                  
TGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4498318‑4498181
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAAACGATCTGGTGTGCAGTAAAGCACTAGACGATCGTCTAGGCTGTACTGCCCTGCTCGGTGTAGCGGATGCTATCAGTACTATGGAGCTTGATATCGCCGTTTATCTGGTGGCTTCGGTACAGGAAGAATTTA  <  NC_000913/4531144‑4531009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A