Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F60 I1 R1 16 98.2 3332656 98.6% 3285998 138.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,259,615 A→G F130S (TTT→TCT)  zur ← DNA‑binding transcriptional repressor Zur

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,259,6150AG100.0% 666.7 / NA 172F130S (TTT→TCT) zurDNA‑binding transcriptional repressor Zur
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (76/96);  total (76/96)

Only 100 of 172 total aligned reads displayed.

GTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGCACATA  >  NC_000913/4259478‑4259751
                                                                                                                                         |                                                                                                                                        
 tACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGAcc                                                                                                                                       >  2:1063854/1‑140 (MQ=255)
 tACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGAcc                                                                                                                                       >  1:973762/1‑140 (MQ=255)
      ccTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCAtt                                                                                                                                  >  1:683047/1‑140 (MQ=255)
        tctTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCAtttt                                                                                                                                >  1:471475/1‑140 (MQ=255)
             aCGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTgccg                                                                                                                           <  1:1028119/140‑1 (MQ=255)
               gcgGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTgccgcc                                                                                                                         <  2:699391/140‑1 (MQ=255)
               gcgGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTgccgcc                                                                                                                         <  1:7237/140‑1 (MQ=255)
                cgGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCACAGGGCAGACCCCATTTTTgccgcc                                                                                                                         <  1:1165688/139‑1 (MQ=255)
                cgGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCACAGGGCAGACCCCATTTTTgccgcc                                                                                                                         >  2:1165688/1‑139 (MQ=255)
                  gTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGc                                                                                                                      <  2:1061369/140‑1 (MQ=255)
                    ttCTTTTTCTCCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGt                                                                                                                    <  1:829459/140‑1 (MQ=255)
                    ttCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGt                                                                                                                    <  1:756029/140‑1 (MQ=255)
                    ttCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGt                                                                                                                    >  1:201484/1‑140 (MQ=255)
                    ttCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGt                                                                                                                    >  2:476143/1‑140 (MQ=255)
                    ttCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGt                                                                                                                    <  2:1524344/140‑1 (MQ=255)
                      cTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTAt                                                                                                                  <  2:805512/140‑1 (MQ=255)
                      cTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTAt                                                                                                                  <  2:1282800/140‑1 (MQ=255)
                        ttttCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGc                                                                                                                <  2:683047/140‑1 (MQ=255)
                         tttCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCa                                                                                                               <  1:1015890/140‑1 (MQ=255)
                          ttCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCAt                                                                                                              <  2:1343329/140‑1 (MQ=255)
                          ttCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCAt                                                                                                              <  2:1389642/140‑1 (MQ=255)
                           tCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATa                                                                                                             <  2:730364/140‑1 (MQ=255)
                                 gCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCt                                                                                                       <  1:1061829/140‑1 (MQ=255)
                                  cacaGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCtt                                                                                                      >  2:554229/1‑140 (MQ=255)
                                   acaGAGTGATCATGCTGGCACTGTTCAGGATTACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTc                                                                                                     <  2:410136/140‑1 (MQ=255)
                                    caGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTcc                                                                                                    <  1:681575/140‑1 (MQ=255)
                                      gagTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCAc                                                                                                  <  2:201484/140‑1 (MQ=255)
                                      gagTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCAc                                                                                                  <  2:847705/140‑1 (MQ=255)
                                      gagTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCAc                                                                                                  <  2:1586654/140‑1 (MQ=255)
                                         tGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGcc                                                                                               >  1:637557/1‑140 (MQ=255)
                                                gCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGca                                                                                        <  1:517113/140‑1 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       >  2:277907/1‑140 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       >  2:477931/1‑140 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       >  2:1086685/1‑140 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       >  2:7169/1‑140 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       <  2:941403/140‑1 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       >  1:1499817/1‑140 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       <  1:1401764/140‑1 (MQ=255)
                                                 cTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCACAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       <  2:1396880/140‑1 (MQ=255)
                                                   ggCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCt                                                                                              <  1:1131908/131‑1 (MQ=255)
                                                   ggCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       <  1:436595/138‑1 (MQ=255)
                                                   ggCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCacac                                                                                     <  2:907126/140‑1 (MQ=255)
                                                   ggCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCacac                                                                                     >  1:1116435/1‑140 (MQ=255)
                                                   ggCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCacac                                                                                     >  1:393256/1‑140 (MQ=255)
                                                     cACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACActc                                                                                   <  1:1345606/140‑1 (MQ=255)
                                                      aCTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGca                                                                                        >  1:186236/1‑134 (MQ=255)
                                                          ttCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGcac                                                                                       <  2:396316/131‑1 (MQ=255)
                                                          ttCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTcttctt                                                                              >  2:1555978/1‑140 (MQ=255)
                                                           tCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCttt                                                                             <  2:637557/140‑1 (MQ=255)
                                                             aGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCa                                                                           <  2:1200919/140‑1 (MQ=255)
                                                               gATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACt                                                                         >  2:1443261/1‑140 (MQ=255)
                                                                  gacgacACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTgcg                                                                      >  1:1623048/1‑140 (MQ=255)
                                                                    cgacACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGcgcc                                                                    >  2:233569/1‑140 (MQ=255)
                                                                         cGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGc                                                               >  1:1296947/1‑140 (MQ=255)
                                                                          gCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCg                                                              <  1:939285/140‑1 (MQ=255)
                                                                            ttCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGAt                                                            <  1:1194591/140‑1 (MQ=255)
                                                                            ttCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGAt                                                            <  2:1623048/140‑1 (MQ=255)
                                                                                 cTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCaa                                                       <  1:1555978/140‑1 (MQ=255)
                                                                                    cTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATa                                                    >  1:645618/1‑140 (MQ=255)
                                                                                      acacATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATaaa                                                  >  1:152377/1‑140 (MQ=255)
                                                                                          aTGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACa                                                <  2:1013116/138‑1 (MQ=255)
                                                                                          aTGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACa                                                >  1:1013116/1‑138 (MQ=255)
                                                                                          aTGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATg                                              >  1:1546896/1‑140 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATc                                                           >  1:839586/1‑125 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATc                                                           <  2:839586/125‑1 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            >  2:386811/1‑140 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            <  1:1328120/140‑1 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            <  2:194698/140‑1 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            <  1:477931/140‑1 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            <  1:7169/140‑1 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            <  1:277907/140‑1 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            >  1:25888/1‑140 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTT‑ACTGCGCCGCAGCGATCGCAAATAAACATGGCt                                           >  2:653539/1‑140 (MQ=255)
                                                                                            gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCAAACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGc                                            >  1:976674/1‑140 (MQ=255)
                                                                                             ccGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCt                                           <  2:1296947/140‑1 (MQ=255)
                                                                                              cGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTg                                          >  1:1365733/1‑140 (MQ=255)
                                                                                                 acaGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACg                                       <  2:312861/140‑1 (MQ=255)
                                                                                                    gagCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTAt                                    >  1:459986/1‑140 (MQ=255)
                                                                                                    gagCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTAt                                    >  1:69380/1‑140 (MQ=255)
                                                                                                     agCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTAtg                                   >  2:1226004/1‑140 (MQ=255)
                                                                                                     agCCCATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTAtg                                   >  2:1125708/1‑140 (MQ=255)
                                                                                                       cccATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACa                                                >  2:1105927/1‑125 (MQ=255)
                                                                                                       cccATGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACa                                                <  1:1105927/125‑1 (MQ=255)
                                                                                                          aTGTGCTTCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTAtgggtgg                              <  1:1261451/140‑1 (MQ=255)
                                                                                                                 tCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATc                       <  2:1179587/140‑1 (MQ=255)
                                                                                                                 tCAATCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATc                       <  2:645618/140‑1 (MQ=255)
                                                                                                                   aaTCACATTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGa                     <  1:1226004/140‑1 (MQ=255)
                                                                                                                        caTTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCATGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGa                <  2:1573812/140‑1 (MQ=255)
                                                                                                                        caTTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGa                <  1:224758/140‑1 (MQ=255)
                                                                                                                        caTTATGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGa                <  2:1410049/140‑1 (MQ=255)
                                                                                                                             tGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATc                       <  2:144447/128‑1 (MQ=255)
                                                                                                                             tGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATc                       >  1:144447/1‑128 (MQ=255)
                                                                                                                             tGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACa                  >  1:1574031/1‑133 (MQ=255)
                                                                                                                             tGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACa           <  1:554229/140‑1 (MQ=255)
                                                                                                                             tGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACa           <  1:1063854/140‑1 (MQ=255)
                                                                                                                             tGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACa           <  2:459986/140‑1 (MQ=255)
                                                                                                                             tGCCGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACa           >  2:262452/1‑140 (MQ=255)
                                                                                                                               ccGCAGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACAAGGCTGACGTATGGGTGGGCTGATCGAACAGATGACaga         <  1:1443261/140‑1 (MQ=255)
                                                                                                                                   aGGGCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGcac     >  1:791922/1‑140 (MQ=255)
                                                                                                                                      gCAGACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGCACATa  <  2:1499817/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGCACATA  >  NC_000913/4259478‑4259751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A