Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F60 I1 R1 19 88.7 3019690 98.6% 2977414 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,582,762 A→T intergenic (‑238/+164) ydeN ← / ← ydeO putative sulfatase/DNA‑binding transcriptional dual regulator YdeO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,582,7620AT100.0% 238.2 / NA 68intergenic (‑238/+164)ydeN/ydeOputative sulfatase/DNA‑binding transcriptional dual regulator YdeO
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (30/38);  total (30/38)

GCTAAAAAAAGGGAAAAAACAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGATCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGT  >  NC_000913/1582625‑1582897
                                                                                                                                         |                                                                                                                                       
gCTAAAAAAAGGGAAAAAACAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTc                                                                                                                                       <  1:1184170/140‑1 (MQ=255)
      aaaaGGGAAAAAACAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCataaat                                                                                                                                 <  1:161997/140‑1 (MQ=255)
         aGGGAAAAAACAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAaataat                                                                                                                              <  2:1144743/140‑1 (MQ=255)
           ggAAAAAACAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCa                                                                                                                            >  1:361416/1‑140 (MQ=255)
               aaaaCAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCa                                                                                                                        <  2:290998/140‑1 (MQ=255)
                aaaCAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       <  1:193038/140‑1 (MQ=255)
                aaaCAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       <  2:361416/140‑1 (MQ=255)
                aaaCAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       <  2:278620/140‑1 (MQ=255)
                aaaCAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       <  2:251246/140‑1 (MQ=255)
                aaaCAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       <  1:427412/140‑1 (MQ=255)
                aaaCAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       <  2:1278641/140‑1 (MQ=255)
                     gTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGt                                                                                                                  >  1:1141708/1‑140 (MQ=255)
                      tCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGtt                                                                                                                 <  2:1490921/140‑1 (MQ=255)
                          tAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGc                                                                                                             <  2:1404532/140‑1 (MQ=255)
                          tAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGc                                                                                                             <  2:970012/140‑1 (MQ=255)
                            aaGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCaa                                                                                                           <  1:494485/140‑1 (MQ=255)
                             aGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAg                                                                                                          <  2:1123968/140‑1 (MQ=255)
                                gTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       >  1:975641/1‑124 (MQ=255)
                                gTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCaa                                                                                                                       <  2:975641/124‑1 (MQ=255)
                                gTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTg                                                                                                        >  1:851152/1‑139 (MQ=255)
                                gTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTg                                                                                                        <  2:851152/139‑1 (MQ=255)
                                 ttGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCa                                                                                                      >  2:235910/1‑140 (MQ=255)
                                   gACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATa                                                                                                    >  1:1182449/1‑140 (MQ=255)
                                     cATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATaaa                                                                                                  <  1:745643/140‑1 (MQ=255)
                                              cTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTgatg                                                                                         >  1:1207585/1‑140 (MQ=255)
                                               tGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTgatgg                                                                                        <  1:976572/140‑1 (MQ=255)
                                                   cTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGt                                                                                    <  2:1182449/140‑1 (MQ=255)
                                                    tATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTc                                                                                   >  2:1124161/1‑140 (MQ=255)
                                                     aTTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCa                                                                                  >  1:1328202/1‑140 (MQ=255)
                                                                   cGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCaa                                                                    >  1:1187841/1‑140 (MQ=255)
                                                                    gCCGATAGACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCaat                                                                   <  1:1354177/140‑1 (MQ=255)
                                                                    gCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAAAGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCaat                                                                   <  2:305906/140‑1 (MQ=255)
                                                                     ccGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCaata                                                                  >  1:1352677/1‑140 (MQ=255)
                                                                        aTAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCaataaat                                                               >  2:535460/1‑140 (MQ=255)
                                                                                      tATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTaaaaa                                                 <  1:1124161/140‑1 (MQ=255)
                                                                                        ttGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAaaca                                               >  1:881196/1‑140 (MQ=255)
                                                                                           atatTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcg                                            >  1:1001292/1‑140 (MQ=255)
                                                                                           atatTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcg                                            <  1:874217/140‑1 (MQ=255)
                                                                                           atatTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcg                                            >  2:771040/1‑140 (MQ=255)
                                                                                           atatTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcg                                            <  1:535460/140‑1 (MQ=255)
                                                                                            tatTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcgc                                           <  1:993673/140‑1 (MQ=255)
                                                                                            tatTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcgc                                           <  1:235910/140‑1 (MQ=255)
                                                                                                taataaATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCgggg                                       <  2:1328202/140‑1 (MQ=255)
                                                                                                  ataaATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCggtg                                       <  2:109885/138‑3 (MQ=255)
                                                                                                  ataaATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCggtg                                       >  1:109885/1‑136 (MQ=255)
                                                                                                  ataaATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCgggg                                       <  1:132933/138‑1 (MQ=255)
                                                                                                  ataaATTATTGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCgggg                                       >  2:132933/1‑138 (MQ=255)
                                                                                                      attattGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcg                                            <  2:413035/129‑1 (MQ=255)
                                                                                                      attattGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcg                                            >  1:413035/1‑129 (MQ=255)
                                                                                                      attattGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGa                                 >  1:169948/1‑140 (MQ=255)
                                                                                                       ttattGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGaa                                >  1:1116368/1‑140 (MQ=255)
                                                                                                          ttGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcgcg                                          <  1:905119/127‑1 (MQ=255)
                                                                                                          ttGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAAcgcg                                          >  2:905119/1‑127 (MQ=255)
                                                                                                          ttGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCgggg                                       <  1:1244019/130‑1 (MQ=255)
                                                                                                          ttGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCgggg                                       >  2:1244019/1‑130 (MQ=255)
                                                                                                           tGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGc                            >  1:1223353/1‑140 (MQ=255)
                                                                                                           tGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGc                            >  2:724504/1‑140 (MQ=255)
                                                                                                           tGCATTTTACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGc                            >  1:120053/1‑140 (MQ=255)
                                                                                                               ttttACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGcc                        >  2:563479/1‑140 (MQ=255)
                                                                                                               ttttACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGcc                        <  2:881196/140‑1 (MQ=255)
                                                                                                                  tACTGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCa                     >  1:951685/1‑140 (MQ=255)
                                                                                                                     tGACAAAATGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCAttt                  <  2:951685/140‑1 (MQ=255)
                                                                                                                         aaaaTGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTaa                <  1:801782/138‑1 (MQ=255)
                                                                                                                         aaaaTGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTaa                >  2:801782/1‑138 (MQ=255)
                                                                                                                            aTGCAGAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCtt           >  2:788984/1‑140 (MQ=255)
                                                                                                                                 gAATTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCa      >  1:797980/1‑140 (MQ=255)
                                                                                                                                   aTTGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGc    <  2:1352677/140‑1 (MQ=255)
                                                                                                                                     tGAGTTCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCgt  <  1:771040/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GCTAAAAAAAGGGAAAAAACAGTCCATAAAGCGTTGACATTACTTTCTGTTCTATTAAGTAATTTCTCGCCGATAAACAACTAATTTATTGATATTTAATAAATTATTGCATTTTACTGACAAAATGCAGAATTGAGATCATAAATAATCATGCAACAGGTTATGCAAGTGCATAAATATGTGATGGATGTCACTTATTTATTTCAATAAATATATCGCCTAAAAACAACGCGGGGCAGGGAATGGCTGCCCCATTTAATTCTTACGCAGCGT  >  NC_000913/1582625‑1582897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A