Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A30 F60 I1 R1	15	91.2	3103664	98.7%	3063316	137.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	911,793	C→T	G120S (GGC→AGC)	hcr ←	NADH oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	911,793	0	C	T	100.0%	358.0 / NA	102	G120S (GGC→AGC)	hcr	NADH oxidoreductase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (52/50); total (52/50)

Only 100 of 102 total aligned reads displayed.

CCGGATAGTTACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCG  >  NC_000913/911658‑911928

ccGGATAGTTACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTgcc                                                                                                                                     >  1:418839/1‑140 (MQ=255)

   gATAGTTACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTgccgcc                                                                                                                                  <  1:1028150/140‑1 (MQ=255)

   gATAGTTACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTgccgcc                                                                                                                                  <  1:947489/140‑1 (MQ=255)

     tAGTTACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTgccgc                                                                                                                                   <  2:1486585/137‑1 (MQ=255)

     tAGTTACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTgccgc                                                                                                                                   >  1:1486585/1‑137 (MQ=255)

        ttACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCaa                                                                                                                             >  2:400196/1‑140 (MQ=255)

        ttACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCaa                                                                                                                             <  1:904524/140‑1 (MQ=255)

          aCGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACa                                                                                                                           >  2:1262312/1‑140 (MQ=255)

          aCGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACa                                                                                                                           >  1:534351/1‑140 (MQ=255)

             ccACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCa                                                                                                                                 <  2:908215/131‑1 (MQ=255)

             ccACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCa                                                                                                                                 >  1:908215/1‑131 (MQ=255)

               aCTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTgccg                                                                                                                                    >  2:928535/1‑126 (MQ=255)

               aCTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTgccg                                                                                                                                    <  1:928535/126‑1 (MQ=255)

               aCTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCaa                                                                                                                             >  1:1292440/1‑133 (MQ=255)

               aCTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCaa                                                                                                                             <  2:1292440/133‑1 (MQ=255)

               aCTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAAt                                                                                                                      <  1:943809/140‑1 (MQ=255)

                cTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAAtt                                                                                                                     >  1:49289/1‑140 (MQ=255)

                cTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAAtt                                                                                                                     >  2:257665/1‑140 (MQ=255)

                     cGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTAtct                                                                                                                >  1:390849/1‑140 (MQ=255)

                      ggCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTAtctt                                                                                                               <  2:390849/140‑1 (MQ=255)

                      ggCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTAtctt                                                                                                               >  1:1512809/1‑140 (MQ=255)

                          aaaaTAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTAtctt                                                                                                               <  1:474437/136‑1 (MQ=255)

                          aaaaTAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTAtctt                                                                                                               >  2:474437/1‑136 (MQ=255)

                              tAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTa                                                                                                       <  1:824196/140‑1 (MQ=255)

                                  aTCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTAtcgt                                                                                                   <  1:1338919/140‑1 (MQ=255)

                                    ccTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTAtcgt                                                                                                   >  1:287277/1‑138 (MQ=255)

                                    ccTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTAtcgt                                                                                                   <  2:287277/138‑1 (MQ=255)

                                     cTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGc                                                                                                <  1:400196/140‑1 (MQ=255)

                                      tGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCa                                                                                               <  2:418839/140‑1 (MQ=255)

                                      tGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCa                                                                                               >  2:307578/1‑140 (MQ=255)

                                      tGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCa                                                                                               >  2:1240056/1‑140 (MQ=255)

                                       gcggcgTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAg                                                                                              >  1:395522/1‑140 (MQ=255)

                                       gcggcgTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAg                                                                                              <  2:139119/140‑1 (MQ=255)

                                        cggcgTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAgg                                                                                             <  1:536932/140‑1 (MQ=255)

                                        cggcgTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAgg                                                                                             >  1:215344/1‑140 (MQ=255)

                                            gTACGCACGTTGTAGATCGCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTaaa                                                                                         >  2:576679/1‑140 (MQ=255)

                                            gTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTaaa                                                                                         <  2:534351/140‑1 (MQ=255)

                                             tACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCa                                                                                               >  1:1250944/1‑133 (MQ=255)

                                             tACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCa                                                                                               <  2:1250944/133‑1 (MQ=255)

                                                      tGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATc                                                                               >  2:295348/1‑140 (MQ=255)

                                                          gATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGt                                                                           >  2:574564/1‑140 (MQ=255)

                                                              aCCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGa                                                                       >  1:841924/1‑140 (MQ=255)

                                                               cccGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCg                                                                        <  2:265405/138‑1 (MQ=255)

                                                               cccGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCg                                                                        >  1:265405/1‑138 (MQ=255)

                                                                ccGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGaaa                                                                     >  1:357088/1‑140 (MQ=255)

                                                                ccGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGaaa                                                                     >  1:276467/1‑140 (MQ=255)

                                                                ccGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGaaa                                                                     >  2:119621/1‑140 (MQ=255)

                                                                    acaTCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCa                                                                 <  1:1356940/140‑1 (MQ=255)

                                                                    acaTCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCa                                                                 <  1:574564/140‑1 (MQ=255)

                                                                    acaTCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCa                                                                 >  1:40451/1‑140 (MQ=255)

                                                                       tCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCagag                                                              >  2:350178/1‑140 (MQ=255)

                                                                        cGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   <  2:260395/134‑1 (MQ=255)

                                                                        cGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   >  1:260395/1‑134 (MQ=255)

                                                                        cGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAgaga                                                             >  2:1176486/1‑140 (MQ=255)

                                                                          gCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCg                                                                        <  1:644131/127‑1 (MQ=255)

                                                                          gCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCg                                                                        <  1:356094/127‑1 (MQ=255)

                                                                          gCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCg                                                                        >  2:356094/1‑127 (MQ=255)

                                                                          gCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCg                                                                        >  2:644131/1‑127 (MQ=255)

                                                                          gCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   >  2:1008407/1‑132 (MQ=255)

                                                                          gCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   <  1:1008407/132‑1 (MQ=255)

                                                                            cTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAAt                                                         >  1:1152259/1‑140 (MQ=255)

                                                                              gtgGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCa                                                       <  1:576679/140‑1 (MQ=255)

                                                                              gtgGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCa                                                       <  2:40451/140‑1 (MQ=255)

                                                                                ggACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                     <  1:1262312/140‑1 (MQ=255)

                                                                                ggACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                     >  1:486845/1‑140 (MQ=255)

                                                                                ggACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                     >  2:1475437/1‑140 (MQ=255)

                                                                                ggACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                     <  1:28707/140‑1 (MQ=255)

                                                                                ggACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                     <  1:1176486/140‑1 (MQ=255)

                                                                                    ggTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   >  2:392208/1‑122 (MQ=255)

                                                                                    ggTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   <  1:1391267/122‑1 (MQ=255)

                                                                                    ggTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   >  2:1391267/1‑122 (MQ=255)

                                                                                    ggTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGc                                                                   <  1:392208/122‑1 (MQ=255)

                                                                                    ggTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGt                                                 <  1:1240056/140‑1 (MQ=255)

                                                                                      ttcttcGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGttt                                               >  1:1057247/1‑140 (MQ=255)

                                                                                        cttcGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTa                                             >  2:1082865/1‑140 (MQ=255)

                                                                                           cGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACAt                                          >  2:1478738/1‑140 (MQ=255)

                                                                                           cGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACAt                                          >  1:1238604/1‑140 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATGATCACCGCGTTTTACATcgcgc                                     <  2:841924/140‑1 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCa                                                       >  1:1442867/1‑122 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCa                                                       <  2:1442867/122‑1 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                     >  2:1293028/1‑124 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCAcc                                                     <  1:1293028/124‑1 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATcgcgc                                     >  2:251925/1‑140 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATcgcgc                                     >  1:46698/1‑140 (MQ=255)

                                                                                                gCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATcgcgc                                     >  1:851421/1‑140 (MQ=255)

                                                                                                  cAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGt                                   <  2:486845/140‑1 (MQ=255)

                                                                                                  cAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGt                                   <  2:395522/140‑1 (MQ=255)

                                                                                                  cAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGt                                   <  1:251925/140‑1 (MQ=255)

                                                                                                    gCGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCa                                 <  2:1057247/140‑1 (MQ=255)

                                                                                                     cGACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAg                                <  1:119621/140‑1 (MQ=255)

                                                                                                      gACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGc                               <  1:307578/140‑1 (MQ=255)

                                                                                                      gACGCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGc                               <  2:619016/140‑1 (MQ=255)

                                                                                                         gCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCAc                            <  2:1152259/140‑1 (MQ=255)

                                                                                                         gCATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCAc                            <  2:851421/140‑1 (MQ=255)

                                                                                                          cATCGACATAATCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACt                           >  2:22038/1‑140 (MQ=255)

                                                                                                                    aTCGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCAGCGCGTCCGAAAGCCATAGATAATCGCCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGac                 <  2:49289/140‑1 (MQ=255)

                                                                                                                      cGGCGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGacac               <  1:688156/140‑1 (MQ=255)

                                                                                                                         cGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTgg                         >  1:725148/1‑127 (MQ=255)

                                                                                                                         cGTGACGCCGCAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTgg                         <  2:725148/127‑1 (MQ=255)

                                                                                                                                   cAGCTTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATccg  >  2:881972/1‑140 (MQ=255)

CCGGATAGTTACGCCACTCATCGGCGAAAATAACATCCTGCGGCGTACGCACGTTGTAGATCACCCGCACATCGGCCTGTGGACGGTTCTTCGCAAGCCAGCGACGCATCGACATAATCGGCGTGACGCCGCAGCCTGCCGCCAGCAACAGGAATTTATCTTCTGCTTTATCGTCGCAGGTAAATTCCCCCATCGCGTCCGAAAGCCAGAGATAATCACCGCGTTTTACATCGCGCGTCAGCCACTGGGAGCCGACACCGTCATCAATCCG  >  NC_000913/911658‑911928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A