Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F60 I1 R1 17 53.0 1785734 98.9% 1766090 139.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,508,485 Δ13 bp coding (1705‑1717/1962 nt) rlhA → 23S rRNA 5‑hydroxycytidine C2501 synthase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1508485 1508497 13 29 [0] [1] 30 rlhA 23S rRNA 5‑hydroxycytidine C2501 synthase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 15084840 (0.000)29 (0.560) 23/272 1.1 100% coding (1704/1962 nt) rlhA 23S rRNA 5‑hydroxycytidine C2501 synthase
?NC_000913 1508498 = 0 (0.000)coding (1718/1962 nt) rlhA 23S rRNA 5‑hydroxycytidine C2501 synthase

GATK/CNVnator alignment

N/A