Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A45 F60 I1 R1 18 98.3 3347606 98.6% 3300739 138.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,310,691 A→G V97A (GTA→GCA)  alsA ← D‑allose ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,310,6910AG100.0% 642.4 / NA 165V97A (GTA→GCA) alsAD‑allose ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (70/95);  total (70/95)

Only 100 of 168 total aligned reads displayed.

TCTCATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTCCGGA  >  NC_000913/4310557‑4310827
                                                                                                                                      |                                                                                                                                        
tctcATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGtt                                                                                                                                     <  1:1596066/140‑1 (MQ=255)
  tcATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTaa                                                                                                                                   <  2:80150/140‑1 (MQ=255)
  tcATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTaa                                                                                                                                   <  1:1248832/140‑1 (MQ=255)
       tAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATtcat                                                                                                                              <  1:57495/140‑1 (MQ=255)
        aGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGAACACGCCATTCTCCCCAGCCGATAATATTTACCCCACAGATTTTTTTCTTCAGACGACGACCAATCTATAAATTTTTCAGTGCGGATAACtcata                                                                                                                             >  2:631670/1‑139 (MQ=255)
         gATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATtcatca                                                                                                                            >  1:916258/1‑140 (MQ=255)
          aTCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATtcat                                                                                                                              <  2:80250/137‑1 (MQ=255)
          aTCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATtcat                                                                                                                              >  1:80250/1‑137 (MQ=255)
          aTCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCaa                                                                                                                           >  2:379404/1‑140 (MQ=255)
             aaCTTTCAAGCCCACGCGTAATAACATCATGGCGGCGTGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATaa                                                                                                                        <  1:631670/140‑1 (MQ=255)
              aCTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTTCAGTGCGGTTTATTCATCAATaaa                                                                                                                       >  2:1601038/1‑139 (MQ=255)
              aCTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAAt                                                                                                                          <  1:664896/137‑1 (MQ=255)
               cTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACg                                                                                                                      <  1:101459/140‑1 (MQ=255)
               cTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACg                                                                                                                      <  1:435858/140‑1 (MQ=255)
                 ttCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCt                                                                                                                    <  2:209919/140‑1 (MQ=255)
                 ttCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCt                                                                                                                    <  2:1368418/140‑1 (MQ=255)
                         cACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTc                                                                                                              <  2:1131428/138‑1 (MQ=255)
                         cACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCt                                                                                                            >  1:473961/1‑140 (MQ=255)
                          aCGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTg                                                                                                           >  1:1434896/1‑140 (MQ=255)
                          aCGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTg                                                                                                           >  2:327308/1‑140 (MQ=255)
                          aCGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTg                                                                                                           <  1:1245565/140‑1 (MQ=255)
                           cgcgTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGa                                                                                                          <  1:1235069/140‑1 (MQ=255)
                            gcgTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGat                                                                                                         >  2:1450043/1‑140 (MQ=255)
                                aataaCATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGataaat                                                                                                     <  2:546421/140‑1 (MQ=255)
                                    aCATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATc                                                                                                 <  2:1369510/140‑1 (MQ=255)
                                     catcatGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATcc                                                                                                <  2:151819/140‑1 (MQ=255)
                                     catcatGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATcc                                                                                                <  2:1011497/140‑1 (MQ=255)
                                      atcatGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATccc                                                                                               >  1:428428/1‑140 (MQ=255)
                                      atcatGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATccc                                                                                               >  1:1310612/1‑140 (MQ=255)
                                        catGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTg                                                                                                           >  1:1476411/1‑126 (MQ=255)
                                        catGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTg                                                                                                           <  2:1476411/126‑1 (MQ=255)
                                        catGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGa                                                                                             >  1:539694/1‑140 (MQ=255)
                                        catGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGa                                                                                             >  2:714870/1‑140 (MQ=255)
                                          tGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGataaat                                                                                                     <  2:1337824/130‑1 (MQ=255)
                                          tGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGataaat                                                                                                     >  1:1337824/1‑130 (MQ=255)
                                          tGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATa                                                                                           >  2:466010/1‑140 (MQ=255)
                                          tGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATa                                                                                           <  1:1505924/140‑1 (MQ=255)
                                          tGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATa                                                                                           <  1:247445/140‑1 (MQ=255)
                                          tGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATa                                                                                           <  1:1450043/140‑1 (MQ=255)
                                               gcgcGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAg                                                                                      <  1:714870/140‑1 (MQ=255)
                                                cgcgGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATcc                                                                                                >  2:534152/1‑129 (MQ=255)
                                                cgcgGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATcc                                                                                                <  1:534152/129‑1 (MQ=255)
                                                cgcgGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGt                                                                                     >  2:302082/1‑140 (MQ=255)
                                                cgcgGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGt                                                                                     >  2:1082236/1‑140 (MQ=255)
                                                   ggACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTtgt                                                                                  <  1:921830/140‑1 (MQ=255)
                                                      cacGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGcc                                                                               >  2:1297178/1‑140 (MQ=255)
                                                       acGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCg                                                                              <  2:453328/140‑1 (MQ=255)
                                                       acGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCg                                                                              <  2:143475/140‑1 (MQ=255)
                                                       acGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCg                                                                              <  2:697479/140‑1 (MQ=255)
                                                          cATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTa                                                                           >  1:1177201/1‑140 (MQ=255)
                                                                tcGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTAt                                                                     <  1:712921/140‑1 (MQ=255)
                                                                   ccAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGAt                                                                  >  1:199542/1‑140 (MQ=255)
                                                                   ccAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGAt                                                                  >  1:1184796/1‑140 (MQ=255)
                                                                    cAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATc                                                                 <  2:473961/140‑1 (MQ=255)
                                                                     aGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATcc                                                                >  2:610308/1‑140 (MQ=255)
                                                                       tCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATc                                                                 <  2:1003226/137‑1 (MQ=255)
                                                                       tCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATc                                                                 >  1:1003226/1‑137 (MQ=255)
                                                                       tCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAg                                                              <  1:1082236/140‑1 (MQ=255)
                                                                        cGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGc                                                             <  1:1297178/140‑1 (MQ=255)
                                                                        cGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGc                                                             <  1:799444/140‑1 (MQ=255)
                                                                            aataTTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGt                                                         <  2:1246569/140‑1 (MQ=255)
                                                                             atatTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGtt                                                        <  1:327308/140‑1 (MQ=255)
                                                                             atatTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGtt                                                        <  2:433967/140‑1 (MQ=255)
                                                                             atatTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGtt                                                        <  1:764846/140‑1 (MQ=255)
                                                                               atTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTtat                                                      <  2:414537/140‑1 (MQ=255)
                                                                               atTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTtat                                                      <  2:199542/140‑1 (MQ=255)
                                                                                  gACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGc                                                   <  2:980521/140‑1 (MQ=255)
                                                                                  gACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGc                                                   <  1:679542/140‑1 (MQ=255)
                                                                                   aCGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCt                                                  >  2:1144340/1‑140 (MQ=255)
                                                                                    cGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTa                                                 <  2:741788/140‑1 (MQ=255)
                                                                                     gCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGAt                                                                  <  2:84836/122‑1 (MQ=255)
                                                                                     gCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTaa                                                <  1:217345/140‑1 (MQ=255)
                                                                                     gCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTaa                                                >  2:1420211/1‑140 (MQ=255)
                                                                                       cacaGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGc                                                   >  2:904546/1‑135 (MQ=255)
                                                                                        acaGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGt                                                         <  1:451398/128‑1 (MQ=255)
                                                                                            aTTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGttatt                                         <  1:670221/140‑1 (MQ=255)
                                                                                                ttttCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATtaatg                                     <  2:1564990/140‑1 (MQ=255)
                                                                                                ttttCGTCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATtaatg                                     <  2:663138/140‑1 (MQ=255)
                                                                                                      tCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATtaatggtaatg                               >  1:1582458/1‑140 (MQ=255)
                                                                                                      tCAGATGACGACCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATtaa                                       >  2:796424/1‑132 (MQ=255)
                                                                                                                acCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTgg                     >  1:1647948/1‑140 (MQ=255)
                                                                                                                acCAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTgg                     <  2:314874/140‑1 (MQ=255)
                                                                                                                 ccAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGt                    <  2:1434896/140‑1 (MQ=255)
                                                                                                                 ccAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGt                    <  1:1144340/140‑1 (MQ=255)
                                                                                                                 ccAATATATAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGt                    <  1:572113/140‑1 (MQ=255)
                                                                                                                    atatatAAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCgg                 <  1:383013/140‑1 (MQ=255)
                                                                                                                         taAATTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCAt            >  1:551325/1‑140 (MQ=255)
                                                                                                                          aaaTTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCgg                 <  2:950315/134‑1 (MQ=255)
                                                                                                                          aaaTTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCgg                 >  1:950315/1‑134 (MQ=255)
                                                                                                                            aTTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCgg                 >  2:460123/1‑132 (MQ=255)
                                                                                                                            aTTTTCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCgg                 <  1:460123/132‑1 (MQ=255)
                                                                                                                               ttCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTc                   <  2:442216/127‑1 (MQ=255)
                                                                                                                               ttCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTc      >  1:1430027/1‑140 (MQ=255)
                                                                                                                               ttCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTc      >  1:933302/1‑140 (MQ=255)
                                                                                                                                tCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGt                    <  2:1561298/125‑1 (MQ=255)
                                                                                                                                tCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGt                    >  1:1561298/1‑125 (MQ=255)
                                                                                                                                tCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCAt            <  1:879830/133‑1 (MQ=255)
                                                                                                                                tCCAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCAt            >  2:879830/1‑133 (MQ=255)
                                                                                                                                 ccAGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTCCg    >  2:1488512/1‑140 (MQ=255)
                                                                                                                                 caaGTGCGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATTCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTCCg    >  2:120488/3‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                        
TCTCATCTAGATCAACTTTCAAGCCCACGCGTAATAACATCATGGCGGCGCGGACACGCATTTCTCGCCAGTCGATAATATTGACGCCACAGATTTTTTTCGTCAGATGACGACCAATATATAAATTTTCCAGTACGGTTAATTCATCAATAACGCTGAGTTCCTGATAAATAATCCCGATACCGAGTTGTGCCGCTAATTTATGATCCAGCTTGTTATAGCTAATGTTATTAATGGTAATGGTGCCTTTGGTCGGCTCATGTATTCCGGA  >  NC_000913/4310557‑4310827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A