Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A45 F60 I1 R1 18 98.3 3347606 98.6% 3300739 138.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,554,677 G→A P34P (CCG→CCA)  uxuR → DNA‑binding transcriptional repressor UxuR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,554,6770GA100.0% 380.3 / NA 110P34P (CCG→CCA) uxuRDNA‑binding transcriptional repressor UxuR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (56/54);  total (56/54)

Only 100 of 111 total aligned reads displayed.

AAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGC  >  NC_000913/4554541‑4554812
                                                                                                                                        |                                                                                                                                       
aaaTTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTCCCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGccaccg                                                                                                                                      <  2:538612/140‑1 (MQ=255)
 aaTTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCgg                                                                                                                                     <  2:1627680/140‑1 (MQ=255)
       aTTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTg                                                                                                                               >  1:1503103/1‑140 (MQ=255)
          aaCCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGaaa                                                                                                                            <  1:1489745/140‑1 (MQ=255)
          aaCCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGaaa                                                                                                                            <  2:358018/140‑1 (MQ=255)
                  cTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGaa                                                                                                                    <  1:1438345/140‑1 (MQ=255)
                          cacaACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGaa                                                                                                                    >  2:719200/1‑132 (MQ=255)
                          cacaACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGaa                                                                                                                    <  1:719200/132‑1 (MQ=255)
                          cacaACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGa                                                                                                            >  2:492892/1‑140 (MQ=255)
                            caacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGTAGAAATGCTTGATg                                                                                                          >  1:1032569/1‑140 (MQ=255)
                            caacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATg                                                                                                          >  1:1288689/1‑140 (MQ=255)
                            caacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATg                                                                                                          >  1:810838/1‑140 (MQ=255)
                            caacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGCAGCGTGAAATTGCAGAAATGCTTGATg                                                                                                          >  2:296322/1‑140 (MQ=255)
                             aacaCCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGt                                                                                                         <  1:1539854/140‑1 (MQ=255)
                               cacCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGt                                                                                                         <  2:1246926/138‑1 (MQ=255)
                               cacCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGt                                                                                                         >  1:1246926/1‑138 (MQ=255)
                               cacCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCa                                                                                                       >  2:1264357/1‑140 (MQ=255)
                                acCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCAc                                                                                                      <  2:1604198/140‑1 (MQ=255)
                                   aTGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCAcgcg                                                                                                   >  1:490981/1‑140 (MQ=255)
                                    tGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCgg                                                                                                  >  2:67995/1‑140 (MQ=255)
                                            gCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACggtggt                                                                                          <  1:620806/140‑1 (MQ=255)
                                            gCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACggtggt                                                                                          <  1:419500/140‑1 (MQ=255)
                                             ccACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTa                                                                                         >  2:565989/1‑140 (MQ=255)
                                             ccACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTa                                                                                         >  2:1040569/1‑140 (MQ=255)
                                              cACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTAc                                                                                        >  1:1291003/1‑140 (MQ=255)
                                                 ctctGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTg                                                                                     <  2:1288689/140‑1 (MQ=255)
                                                 ctctGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTg                                                                                     <  1:1264357/140‑1 (MQ=255)
                                                  tctGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGa                                                                                    <  2:263460/140‑1 (MQ=255)
                                                   ctGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGaa                                                                                   <  1:565989/140‑1 (MQ=255)
                                                   ctGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGaa                                                                                   >  2:1555527/1‑140 (MQ=255)
                                                    tGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAg                                                                                  >  1:958917/1‑140 (MQ=255)
                                                        cAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCt                                                                              <  2:89354/140‑1 (MQ=255)
                                                          aaGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACG‑CGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGAt                                                                           <  1:172565/140‑1 (MQ=255)
                                                                ttACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGc                                                                      >  2:705160/1‑140 (MQ=255)
                                                                ttACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGc                                                                      >  1:884675/1‑140 (MQ=255)
                                                                ttACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGc                                                                      >  2:778993/1‑140 (MQ=255)
                                                                ttACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGc                                                                      >  2:1479170/1‑140 (MQ=255)
                                                                   ccAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTgg                                                                   <  1:431607/140‑1 (MQ=255)
                                                                    cAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGga                                                                  <  2:1503103/140‑1 (MQ=255)
                                                                       gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                               >  1:263225/1‑140 (MQ=255)
                                                                       gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                               >  2:326807/1‑140 (MQ=255)
                                                                       gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                               <  2:884675/140‑1 (MQ=255)
                                                                       gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                               >  2:311577/1‑140 (MQ=255)
                                                                       gAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGAt                                                               >  1:793309/1‑140 (MQ=255)
                                                                         aGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCa                                                             <  1:705160/140‑1 (MQ=255)
                                                                            cGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAg                                                          >  1:498653/1‑140 (MQ=255)
                                                                            cGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAg                                                          >  1:755397/1‑140 (MQ=255)
                                                                              gggCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAggg                                                        <  2:263225/140‑1 (MQ=255)
                                                                                              tCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtgg                                                    >  1:1203348/1‑128 (MQ=255)
                                                                                              tCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCtgg                                                    <  2:1203348/128‑1 (MQ=255)
                                                                                              tCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGcc                                        >  1:1220505/1‑140 (MQ=255)
                                                                                                tGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCgg                                      >  1:907076/1‑140 (MQ=255)
                                                                                                 gATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCggg                                     <  1:1040569/140‑1 (MQ=255)
                                                                                                 gATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCggg                                     <  1:1555527/140‑1 (MQ=255)
                                                                                                  aTCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCgggg                                    >  2:42279/1‑140 (MQ=255)
                                                                                                   tCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGt                                   >  1:241282/1‑140 (MQ=255)
                                                                                                     aTAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                 <  1:326807/140‑1 (MQ=255)
                                                                                                     aTAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                 <  1:296322/140‑1 (MQ=255)
                                                                                                     aTAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                 <  2:810838/140‑1 (MQ=255)
                                                                                                     aTAAAGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                 <  1:311577/140‑1 (MQ=255)
                                                                                                       aaaGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCg                               <  1:1479170/140‑1 (MQ=255)
                                                                                                       aaaGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCg                               <  2:75766/140‑1 (MQ=255)
                                                                                                        aaGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCgg                              <  1:1661935/140‑1 (MQ=255)
                                                                                                         aGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGt                             <  1:758439/140‑1 (MQ=255)
                                                                                                         aGACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGt                             <  2:793309/140‑1 (MQ=255)
                                                                                                          gACGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTa                            >  1:1190806/1‑140 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACg                                          <  1:1049919/124‑1 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACg                                          >  2:1049919/1‑124 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCggg                                     <  2:1178530/129‑1 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCggg                                     >  1:1178530/1‑129 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                 <  2:391890/133‑1 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                 >  1:391890/1‑133 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                          >  1:817981/1‑140 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                          >  2:609275/1‑140 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                          >  1:1293009/1‑140 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                          >  2:1236606/1‑140 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                          >  1:804570/1‑140 (MQ=255)
                                                                                                            cGCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATc                          >  1:424699/1‑140 (MQ=255)
                                                                                                             gCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCt                         <  2:804570/140‑1 (MQ=255)
                                                                                                             gCCGTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCt                         <  1:609275/140‑1 (MQ=255)
                                                                                                                gTACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATg                      >  1:167669/1‑140 (MQ=255)
                                                                                                                 tACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCGGGGGTGCCgg                              <  2:387337/131‑1 (MQ=255)
                                                                                                                 tACAATCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCGGGGGTGCCgg                              >  1:387337/1‑131 (MQ=255)
                                                                                                                     aTCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCtt                 <  2:498653/140‑1 (MQ=255)
                                                                                                                     aTCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGGACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGc                                 >  1:258265/1‑124 (MQ=255)
                                                                                                                      tCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTg                <  2:1562901/140‑1 (MQ=255)
                                                                                                                      tCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTg                <  2:676470/140‑1 (MQ=255)
                                                                                                                      tCCTGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTg                >  2:1664158/1‑140 (MQ=255)
                                                                                                                         tGGCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCgg                              <  2:1539951/123‑1 (MQ=255)
                                                                                                                           gCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAAc           >  1:466118/1‑140 (MQ=255)
                                                                                                                           gCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAAc           >  1:377459/1‑140 (MQ=255)
                                                                                                                           gCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAAc           >  1:1599296/1‑140 (MQ=255)
                                                                                                                           gCGAACGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAAc           >  2:879400/1‑140 (MQ=255)
                                                                                                                               aCGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGtt                    >  1:932093/1‑127 (MQ=255)
                                                                                                                               aCGGCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGtt                    <  2:932093/127‑1 (MQ=255)
                                                                                                                                 ggCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAgtc     <  1:1585589/140‑3 (MQ=255)
                                                                                                                                 ggCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGc     <  2:1293009/140‑1 (MQ=255)
                                                                                                                                 ggCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGc     <  1:1301860/140‑1 (MQ=255)
                                                                                                                                  gCTGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCa    >  1:1140701/1‑140 (MQ=255)
                                                                                                                                    tGCCACCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGc  <  2:1220505/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
AAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCTGATCATAAAGACGCCGTACAATCCTGGCGAACGGCTGCCGCCGGAGCGTGAAATTGCAGAAATGCTTGATGTCACGCGGACGGTGGTACGTGAAGCGCTGATCATGCTGGAGATCAAAGGGCTGGTGGAAGTACGCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGC  >  NC_000913/4554541‑4554812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A